Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00332 and ECD_00333 are separated by 16 nucleotides ECD_00333 and ECD_00334 are separated by 119 nucleotides ECD_00334 and ECD_00335 are separated by 182 nucleotides
ECD_00332: ECD_00332 - diguanylate cyclase, cellulose regualtor, at 368,328 to 369,443
_00332
ECD_00333: ECD_00333 - pyrroline-5-carboxylate reductase, NAD(P)-binding, at 369,460 to 370,269
_00333
ECD_00334: ECD_00334 - UPF0178 family protein, at 370,389 to 370,847
_00334
ECD_00335: ECD_00335 - shikimate kinase II, at 371,030 to 371,554
_00335
Position (kb) 369
370
371 Strain fitness (log2 ratio) -2
-1
0
1
2 at 368.575 kb on + strand, within ECD_00332 at 368.613 kb on - strand, within ECD_00332 at 368.633 kb on - strand, within ECD_00332 at 368.714 kb on + strand, within ECD_00332 at 368.714 kb on + strand, within ECD_00332 at 368.867 kb on + strand, within ECD_00332 at 368.878 kb on - strand, within ECD_00332 at 368.982 kb on + strand, within ECD_00332 at 368.983 kb on - strand, within ECD_00332 at 368.983 kb on - strand, within ECD_00332 at 369.005 kb on + strand, within ECD_00332 at 369.005 kb on + strand, within ECD_00332 at 369.005 kb on + strand, within ECD_00332 at 369.006 kb on - strand, within ECD_00332 at 369.396 kb on + strand at 369.589 kb on - strand, within ECD_00333 at 369.589 kb on - strand, within ECD_00333 at 369.589 kb on - strand, within ECD_00333 at 369.589 kb on - strand, within ECD_00333 at 369.647 kb on - strand, within ECD_00333 at 369.729 kb on + strand, within ECD_00333 at 369.729 kb on + strand, within ECD_00333 at 369.729 kb on + strand, within ECD_00333 at 369.730 kb on - strand, within ECD_00333 at 369.730 kb on - strand, within ECD_00333 at 369.737 kb on + strand, within ECD_00333 at 369.793 kb on + strand, within ECD_00333 at 369.823 kb on - strand, within ECD_00333 at 370.006 kb on - strand, within ECD_00333 at 370.006 kb on - strand, within ECD_00333 at 370.166 kb on + strand, within ECD_00333 at 370.167 kb on - strand, within ECD_00333 at 370.167 kb on - strand, within ECD_00333 at 370.249 kb on - strand at 370.322 kb on + strand at 370.322 kb on + strand at 370.332 kb on + strand at 370.389 kb on - strand at 370.461 kb on - strand, within ECD_00334 at 370.483 kb on + strand, within ECD_00334 at 370.613 kb on + strand, within ECD_00334 at 370.615 kb on + strand, within ECD_00334 at 370.677 kb on + strand, within ECD_00334 at 370.722 kb on - strand, within ECD_00334 at 370.732 kb on + strand, within ECD_00334 at 370.733 kb on - strand, within ECD_00334 at 370.733 kb on - strand, within ECD_00334 at 370.767 kb on - strand, within ECD_00334 at 370.881 kb on - strand at 371.012 kb on + strand at 371.155 kb on + strand, within ECD_00335 at 371.257 kb on + strand, within ECD_00335
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 368,575 + ECD_00332 0.22 -0.1 368,613 - ECD_00332 0.26 -0.5 368,633 - ECD_00332 0.27 -0.1 368,714 + ECD_00332 0.35 -0.7 368,714 + ECD_00332 0.35 +0.1 368,867 + ECD_00332 0.48 -0.9 368,878 - ECD_00332 0.49 -0.3 368,982 + ECD_00332 0.59 +1.1 368,983 - ECD_00332 0.59 +0.2 368,983 - ECD_00332 0.59 +0.3 369,005 + ECD_00332 0.61 -0.1 369,005 + ECD_00332 0.61 +0.6 369,005 + ECD_00332 0.61 +2.0 369,006 - ECD_00332 0.61 -0.2 369,396 + -0.0 369,589 - ECD_00333 0.16 -1.8 369,589 - ECD_00333 0.16 -2.5 369,589 - ECD_00333 0.16 -1.2 369,589 - ECD_00333 0.16 -1.3 369,647 - ECD_00333 0.23 -2.0 369,729 + ECD_00333 0.33 -2.0 369,729 + ECD_00333 0.33 -1.7 369,729 + ECD_00333 0.33 -0.4 369,730 - ECD_00333 0.33 -0.6 369,730 - ECD_00333 0.33 -0.0 369,737 + ECD_00333 0.34 -1.6 369,793 + ECD_00333 0.41 -1.8 369,823 - ECD_00333 0.45 -0.5 370,006 - ECD_00333 0.67 -1.1 370,006 - ECD_00333 0.67 -2.1 370,166 + ECD_00333 0.87 -1.3 370,167 - ECD_00333 0.87 -1.5 370,167 - ECD_00333 0.87 -1.7 370,249 - -1.6 370,322 + -1.2 370,322 + +0.3 370,332 + -2.5 370,389 - +1.4 370,461 - ECD_00334 0.16 +0.1 370,483 + ECD_00334 0.20 +0.2 370,613 + ECD_00334 0.49 +2.5 370,615 + ECD_00334 0.49 +0.3 370,677 + ECD_00334 0.63 +0.4 370,722 - ECD_00334 0.73 -1.2 370,732 + ECD_00334 0.75 -0.4 370,733 - ECD_00334 0.75 +1.8 370,733 - ECD_00334 0.75 +0.8 370,767 - ECD_00334 0.82 +0.2 370,881 - -0.2 371,012 + +0.6 371,155 + ECD_00335 0.24 +0.0 371,257 + ECD_00335 0.43 +0.2
Or see this region's nucleotide sequence