Strain Fitness in Escherichia coli BL21 around ECD_00333

Experiment: Mixed culture, Halobacteriovorax-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00332 and ECD_00333 are separated by 16 nucleotidesECD_00333 and ECD_00334 are separated by 119 nucleotidesECD_00334 and ECD_00335 are separated by 182 nucleotides ECD_00332: ECD_00332 - diguanylate cyclase, cellulose regualtor, at 368,328 to 369,443 _00332 ECD_00333: ECD_00333 - pyrroline-5-carboxylate reductase, NAD(P)-binding, at 369,460 to 370,269 _00333 ECD_00334: ECD_00334 - UPF0178 family protein, at 370,389 to 370,847 _00334 ECD_00335: ECD_00335 - shikimate kinase II, at 371,030 to 371,554 _00335 Position (kb) 369 370 371Strain fitness (log2 ratio) -2 -1 0 1 2at 368.575 kb on + strand, within ECD_00332at 368.613 kb on - strand, within ECD_00332at 368.633 kb on - strand, within ECD_00332at 368.714 kb on + strand, within ECD_00332at 368.714 kb on + strand, within ECD_00332at 368.867 kb on + strand, within ECD_00332at 368.878 kb on - strand, within ECD_00332at 368.982 kb on + strand, within ECD_00332at 368.983 kb on - strand, within ECD_00332at 368.983 kb on - strand, within ECD_00332at 369.005 kb on + strand, within ECD_00332at 369.005 kb on + strand, within ECD_00332at 369.005 kb on + strand, within ECD_00332at 369.006 kb on - strand, within ECD_00332at 369.396 kb on + strandat 369.589 kb on - strand, within ECD_00333at 369.589 kb on - strand, within ECD_00333at 369.589 kb on - strand, within ECD_00333at 369.589 kb on - strand, within ECD_00333at 369.647 kb on - strand, within ECD_00333at 369.729 kb on + strand, within ECD_00333at 369.729 kb on + strand, within ECD_00333at 369.729 kb on + strand, within ECD_00333at 369.730 kb on - strand, within ECD_00333at 369.730 kb on - strand, within ECD_00333at 369.737 kb on + strand, within ECD_00333at 369.793 kb on + strand, within ECD_00333at 369.823 kb on - strand, within ECD_00333at 370.006 kb on - strand, within ECD_00333at 370.006 kb on - strand, within ECD_00333at 370.166 kb on + strand, within ECD_00333at 370.167 kb on - strand, within ECD_00333at 370.167 kb on - strand, within ECD_00333at 370.249 kb on - strandat 370.322 kb on + strandat 370.322 kb on + strandat 370.332 kb on + strandat 370.389 kb on - strandat 370.461 kb on - strand, within ECD_00334at 370.483 kb on + strand, within ECD_00334at 370.613 kb on + strand, within ECD_00334at 370.615 kb on + strand, within ECD_00334at 370.677 kb on + strand, within ECD_00334at 370.722 kb on - strand, within ECD_00334at 370.732 kb on + strand, within ECD_00334at 370.733 kb on - strand, within ECD_00334at 370.733 kb on - strand, within ECD_00334at 370.767 kb on - strand, within ECD_00334at 370.881 kb on - strandat 371.012 kb on + strandat 371.155 kb on + strand, within ECD_00335at 371.257 kb on + strand, within ECD_00335

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1
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368,575 + ECD_00332 0.22 -0.1
368,613 - ECD_00332 0.26 -0.5
368,633 - ECD_00332 0.27 -0.1
368,714 + ECD_00332 0.35 -0.7
368,714 + ECD_00332 0.35 +0.1
368,867 + ECD_00332 0.48 -0.9
368,878 - ECD_00332 0.49 -0.3
368,982 + ECD_00332 0.59 +1.1
368,983 - ECD_00332 0.59 +0.2
368,983 - ECD_00332 0.59 +0.3
369,005 + ECD_00332 0.61 -0.1
369,005 + ECD_00332 0.61 +0.6
369,005 + ECD_00332 0.61 +2.0
369,006 - ECD_00332 0.61 -0.2
369,396 + -0.0
369,589 - ECD_00333 0.16 -1.8
369,589 - ECD_00333 0.16 -2.5
369,589 - ECD_00333 0.16 -1.2
369,589 - ECD_00333 0.16 -1.3
369,647 - ECD_00333 0.23 -2.0
369,729 + ECD_00333 0.33 -2.0
369,729 + ECD_00333 0.33 -1.7
369,729 + ECD_00333 0.33 -0.4
369,730 - ECD_00333 0.33 -0.6
369,730 - ECD_00333 0.33 -0.0
369,737 + ECD_00333 0.34 -1.6
369,793 + ECD_00333 0.41 -1.8
369,823 - ECD_00333 0.45 -0.5
370,006 - ECD_00333 0.67 -1.1
370,006 - ECD_00333 0.67 -2.1
370,166 + ECD_00333 0.87 -1.3
370,167 - ECD_00333 0.87 -1.5
370,167 - ECD_00333 0.87 -1.7
370,249 - -1.6
370,322 + -1.2
370,322 + +0.3
370,332 + -2.5
370,389 - +1.4
370,461 - ECD_00334 0.16 +0.1
370,483 + ECD_00334 0.20 +0.2
370,613 + ECD_00334 0.49 +2.5
370,615 + ECD_00334 0.49 +0.3
370,677 + ECD_00334 0.63 +0.4
370,722 - ECD_00334 0.73 -1.2
370,732 + ECD_00334 0.75 -0.4
370,733 - ECD_00334 0.75 +1.8
370,733 - ECD_00334 0.75 +0.8
370,767 - ECD_00334 0.82 +0.2
370,881 - -0.2
371,012 + +0.6
371,155 + ECD_00335 0.24 +0.0
371,257 + ECD_00335 0.43 +0.2

Or see this region's nucleotide sequence