Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00310 and ECD_00311 are separated by 34 nucleotides ECD_00311 and ECD_00312 are separated by 185 nucleotides ECD_00312 and ECD_00313 are separated by 81 nucleotides ECD_00313 and ECD_00314 overlap by 82 nucleotides ECD_00314 and ECD_00315 are separated by 163 nucleotides
ECD_00310: ECD_00310 - alcohol dehydrogenase class III; glutathione-dependent formaldehyde dehydrogenase, at 347,798 to 348,907
_00310
ECD_00311: ECD_00311 - regulator protein that represses frmRAB operon, at 348,942 to 349,217
_00311
ECD_00312: ECD_00312 - outer membrane protein, at 349,403 to 350,176
_00312
ECD_00313: ECD_00313 - IS1 protein InsB, at 350,258 to 350,761
_00313
ECD_00314: ECD_00314 - IS1 protein InsA, at 350,680 to 350,955
_00314
ECD_00315: ECD_00315 - taurine ABC transporter periplasmic binding protein, at 351,119 to 352,081
_00315
Position (kb) 349
350
351 Strain fitness (log2 ratio) -1
0
1 at 348.477 kb on + strand, within ECD_00310 at 348.478 kb on - strand, within ECD_00310 at 348.505 kb on - strand, within ECD_00310 at 348.510 kb on + strand, within ECD_00310 at 348.645 kb on + strand, within ECD_00310 at 348.773 kb on - strand, within ECD_00310 at 348.773 kb on - strand, within ECD_00310 at 348.811 kb on + strand at 349.007 kb on - strand, within ECD_00311 at 349.105 kb on - strand, within ECD_00311 at 349.246 kb on - strand at 349.288 kb on - strand at 349.291 kb on - strand at 349.445 kb on - strand at 349.445 kb on - strand at 349.498 kb on + strand, within ECD_00312 at 349.499 kb on - strand, within ECD_00312 at 349.610 kb on + strand, within ECD_00312 at 349.611 kb on - strand, within ECD_00312 at 349.618 kb on + strand, within ECD_00312 at 349.666 kb on + strand, within ECD_00312 at 349.667 kb on - strand, within ECD_00312 at 349.668 kb on + strand, within ECD_00312 at 349.669 kb on - strand, within ECD_00312 at 349.672 kb on + strand, within ECD_00312 at 349.673 kb on - strand, within ECD_00312 at 349.705 kb on - strand, within ECD_00312 at 349.732 kb on + strand, within ECD_00312 at 349.735 kb on - strand, within ECD_00312 at 349.735 kb on - strand, within ECD_00312 at 349.742 kb on + strand, within ECD_00312 at 349.779 kb on + strand, within ECD_00312 at 349.783 kb on - strand, within ECD_00312 at 349.841 kb on - strand, within ECD_00312 at 349.877 kb on - strand, within ECD_00312 at 349.928 kb on - strand, within ECD_00312 at 350.046 kb on + strand, within ECD_00312 at 350.046 kb on + strand, within ECD_00312 at 350.047 kb on - strand, within ECD_00312 at 350.234 kb on + strand at 351.073 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 348,477 + ECD_00310 0.61 +0.6 348,478 - ECD_00310 0.61 -0.3 348,505 - ECD_00310 0.64 -0.6 348,510 + ECD_00310 0.64 +0.5 348,645 + ECD_00310 0.76 +0.2 348,773 - ECD_00310 0.88 -1.0 348,773 - ECD_00310 0.88 +0.1 348,811 + -0.2 349,007 - ECD_00311 0.24 -0.0 349,105 - ECD_00311 0.59 -0.1 349,246 - +0.6 349,288 - -0.2 349,291 - +0.2 349,445 - +0.7 349,445 - +0.1 349,498 + ECD_00312 0.12 +0.1 349,499 - ECD_00312 0.12 +0.2 349,610 + ECD_00312 0.27 -1.2 349,611 - ECD_00312 0.27 +0.8 349,618 + ECD_00312 0.28 -0.4 349,666 + ECD_00312 0.34 +0.7 349,667 - ECD_00312 0.34 -0.2 349,668 + ECD_00312 0.34 -0.5 349,669 - ECD_00312 0.34 +0.5 349,672 + ECD_00312 0.35 -1.7 349,673 - ECD_00312 0.35 +0.3 349,705 - ECD_00312 0.39 +1.0 349,732 + ECD_00312 0.43 +0.3 349,735 - ECD_00312 0.43 -0.4 349,735 - ECD_00312 0.43 +0.1 349,742 + ECD_00312 0.44 +0.1 349,779 + ECD_00312 0.49 +0.4 349,783 - ECD_00312 0.49 +0.8 349,841 - ECD_00312 0.57 -0.4 349,877 - ECD_00312 0.61 +0.3 349,928 - ECD_00312 0.68 +0.1 350,046 + ECD_00312 0.83 -0.1 350,046 + ECD_00312 0.83 +0.2 350,047 - ECD_00312 0.83 -0.4 350,234 + +0.0 351,073 + -0.9
Or see this region's nucleotide sequence