Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00299 and ECD_00300 are separated by 76 nucleotides ECD_00300 and ECD_00301 are separated by 190 nucleotides
ECD_00299: ECD_00299 - lactose-inducible lac operon transcriptional repressor, at 335,963 to 337,045
_00299
ECD_00300: ECD_00300 - mhp operon transcriptional activator, at 337,122 to 337,955
_00300
ECD_00301: ECD_00301 - 3-(3-hydroxyphenyl)propionate hydroxylase, at 338,146 to 339,810
_00301
Position (kb) 337
338 Strain fitness (log2 ratio) -1
0
1 at 337.129 kb on - strand at 337.164 kb on - strand at 337.264 kb on + strand, within ECD_00300 at 337.264 kb on + strand, within ECD_00300 at 337.265 kb on - strand, within ECD_00300 at 337.265 kb on - strand, within ECD_00300 at 337.265 kb on - strand, within ECD_00300 at 337.430 kb on - strand, within ECD_00300 at 337.777 kb on + strand, within ECD_00300 at 337.777 kb on + strand, within ECD_00300 at 337.777 kb on + strand, within ECD_00300 at 337.777 kb on + strand, within ECD_00300 at 337.778 kb on - strand, within ECD_00300 at 337.778 kb on - strand, within ECD_00300 at 337.778 kb on - strand, within ECD_00300 at 337.886 kb on + strand at 337.891 kb on - strand at 337.978 kb on - strand at 338.043 kb on + strand at 338.044 kb on - strand at 338.089 kb on + strand at 338.153 kb on + strand at 338.154 kb on - strand at 338.154 kb on - strand at 338.188 kb on - strand at 338.289 kb on + strand at 338.290 kb on - strand at 338.385 kb on + strand, within ECD_00301 at 338.386 kb on - strand, within ECD_00301 at 338.386 kb on - strand, within ECD_00301 at 338.779 kb on - strand, within ECD_00301 at 338.782 kb on + strand, within ECD_00301 at 338.782 kb on + strand, within ECD_00301 at 338.782 kb on + strand, within ECD_00301 at 338.782 kb on + strand, within ECD_00301 at 338.782 kb on + strand, within ECD_00301 at 338.782 kb on + strand, within ECD_00301 at 338.783 kb on - strand, within ECD_00301 at 338.783 kb on - strand, within ECD_00301 at 338.783 kb on - strand, within ECD_00301 at 338.783 kb on - strand, within ECD_00301 at 338.783 kb on - strand, within ECD_00301 at 338.837 kb on + strand, within ECD_00301 at 338.853 kb on + strand, within ECD_00301
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 337,129 - +0.1 337,164 - +0.1 337,264 + ECD_00300 0.17 -0.2 337,264 + ECD_00300 0.17 +0.1 337,265 - ECD_00300 0.17 +0.9 337,265 - ECD_00300 0.17 -0.2 337,265 - ECD_00300 0.17 +0.0 337,430 - ECD_00300 0.37 -0.1 337,777 + ECD_00300 0.79 -0.7 337,777 + ECD_00300 0.79 -0.2 337,777 + ECD_00300 0.79 +0.9 337,777 + ECD_00300 0.79 +0.5 337,778 - ECD_00300 0.79 -0.6 337,778 - ECD_00300 0.79 +0.3 337,778 - ECD_00300 0.79 +0.6 337,886 + -0.3 337,891 - -0.3 337,978 - +0.3 338,043 + -0.9 338,044 - +0.3 338,089 + -0.1 338,153 + -0.4 338,154 - -0.2 338,154 - -0.2 338,188 - -0.8 338,289 + +0.3 338,290 - +0.4 338,385 + ECD_00301 0.14 +1.0 338,386 - ECD_00301 0.14 +0.0 338,386 - ECD_00301 0.14 -0.5 338,779 - ECD_00301 0.38 -0.5 338,782 + ECD_00301 0.38 -0.4 338,782 + ECD_00301 0.38 -0.4 338,782 + ECD_00301 0.38 +0.6 338,782 + ECD_00301 0.38 -0.7 338,782 + ECD_00301 0.38 -0.2 338,782 + ECD_00301 0.38 +0.3 338,783 - ECD_00301 0.38 +0.3 338,783 - ECD_00301 0.38 -0.4 338,783 - ECD_00301 0.38 -0.3 338,783 - ECD_00301 0.38 +0.2 338,783 - ECD_00301 0.38 +0.5 338,837 + ECD_00301 0.42 -0.4 338,853 + ECD_00301 0.42 -0.5
Or see this region's nucleotide sequence