Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00228 and ECD_00229 are separated by 9 nucleotides ECD_00229 and ECD_00230 are separated by 233 nucleotides ECD_00230 and ECD_00231 overlap by 32 nucleotides ECD_00231 and ECD_00232 are separated by 56 nucleotides
ECD_00228: ECD_00228 - mRNA interferase toxin of the YafO-YafN toxin-antitoxin system, at 256,867 to 257,265
_00228
ECD_00229: ECD_00229 - GNAT family putative N-acetyltransferase, at 257,275 to 257,727
_00229
ECD_00230: ECD_00230 - hypothetical protein, at 257,961 to 258,227
_00230
ECD_00231: ECD_00231 - peptide chain release factor 2, at 258,196 to 258,696
_00231
ECD_00232: ECD_00232 - aminoacyl-histidine dipeptidase (peptidase D), at 258,753 to 260,210
_00232
Position (kb) 257
258
259 Strain fitness (log2 ratio) -1
0
1 at 256.976 kb on + strand, within ECD_00228 at 256.977 kb on - strand, within ECD_00228 at 256.977 kb on - strand, within ECD_00228 at 257.127 kb on - strand, within ECD_00228 at 257.129 kb on - strand, within ECD_00228 at 257.516 kb on + strand, within ECD_00229 at 257.958 kb on + strand at 257.970 kb on + strand at 258.061 kb on + strand, within ECD_00230 at 258.062 kb on - strand, within ECD_00230 at 258.279 kb on - strand, within ECD_00231 at 258.301 kb on - strand, within ECD_00231 at 258.375 kb on + strand, within ECD_00231 at 258.456 kb on + strand, within ECD_00231 at 258.685 kb on - strand at 258.808 kb on - strand at 258.854 kb on + strand at 258.855 kb on - strand at 258.867 kb on - strand at 258.968 kb on - strand, within ECD_00232 at 258.979 kb on - strand, within ECD_00232 at 259.091 kb on - strand, within ECD_00232 at 259.097 kb on + strand, within ECD_00232
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 256,976 + ECD_00228 0.27 -1.7 256,977 - ECD_00228 0.28 -0.1 256,977 - ECD_00228 0.28 -0.6 257,127 - ECD_00228 0.65 -0.7 257,129 - ECD_00228 0.66 +0.8 257,516 + ECD_00229 0.53 -0.6 257,958 + -0.2 257,970 + +0.0 258,061 + ECD_00230 0.37 -0.2 258,062 - ECD_00230 0.38 -0.9 258,279 - ECD_00231 0.17 +0.9 258,301 - ECD_00231 0.21 +0.1 258,375 + ECD_00231 0.36 +0.4 258,456 + ECD_00231 0.52 +0.7 258,685 - -0.4 258,808 - -0.1 258,854 + +0.1 258,855 - -0.5 258,867 - +0.3 258,968 - ECD_00232 0.15 -0.0 258,979 - ECD_00232 0.16 +0.8 259,091 - ECD_00232 0.23 +0.5 259,097 + ECD_00232 0.24 -0.3
Or see this region's nucleotide sequence