Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00065 and ECD_00066 are separated by 338 nucleotides ECD_00066 and ECD_00067 are separated by 85 nucleotides ECD_00067 and ECD_00068 are separated by 113 nucleotides
ECD_00065: ECD_00065 - L-ribulokinase, at 71,153 to 72,853
_00065
ECD_00066: ECD_00066 - ara regulon transcriptional activator; autorepressor, at 73,192 to 74,070
_00066
ECD_00067: ECD_00067 - DedA family inner membrane protein, at 74,156 to 74,920
_00067
ECD_00068: ECD_00068 - thiamine/thiamine pyrophosphate ABC transporter ATPase, at 75,034 to 75,732
_00068
Position (kb) 73
74
75 Strain fitness (log2 ratio) -1
0
1 at 72.235 kb on + strand, within ECD_00065 at 72.403 kb on - strand, within ECD_00065 at 72.418 kb on - strand, within ECD_00065 at 72.761 kb on + strand at 72.983 kb on - strand at 73.011 kb on - strand at 73.073 kb on + strand at 73.073 kb on + strand at 73.073 kb on + strand at 73.073 kb on + strand at 73.324 kb on + strand, within ECD_00066 at 73.324 kb on + strand, within ECD_00066 at 73.326 kb on + strand, within ECD_00066 at 73.326 kb on + strand, within ECD_00066 at 73.326 kb on + strand, within ECD_00066 at 73.326 kb on + strand, within ECD_00066 at 73.401 kb on + strand, within ECD_00066 at 73.402 kb on - strand, within ECD_00066 at 73.480 kb on + strand, within ECD_00066 at 73.480 kb on + strand, within ECD_00066 at 73.529 kb on + strand, within ECD_00066 at 73.744 kb on + strand, within ECD_00066 at 73.744 kb on + strand, within ECD_00066 at 73.854 kb on + strand, within ECD_00066 at 73.862 kb on + strand, within ECD_00066 at 73.863 kb on - strand, within ECD_00066 at 73.884 kb on + strand, within ECD_00066 at 73.884 kb on + strand, within ECD_00066 at 73.884 kb on + strand, within ECD_00066 at 73.884 kb on + strand, within ECD_00066 at 73.884 kb on + strand, within ECD_00066 at 73.885 kb on - strand, within ECD_00066 at 73.970 kb on - strand, within ECD_00066 at 73.983 kb on - strand at 74.051 kb on + strand at 74.052 kb on - strand at 74.108 kb on - strand at 74.108 kb on - strand at 74.112 kb on + strand at 74.112 kb on + strand at 74.180 kb on - strand at 74.183 kb on - strand at 74.198 kb on + strand at 74.199 kb on - strand at 74.262 kb on + strand, within ECD_00067 at 74.579 kb on - strand, within ECD_00067 at 74.587 kb on + strand, within ECD_00067 at 74.786 kb on + strand, within ECD_00067 at 74.787 kb on - strand, within ECD_00067 at 74.787 kb on - strand, within ECD_00067 at 74.885 kb on + strand at 74.885 kb on + strand at 74.885 kb on + strand at 74.885 kb on + strand at 74.885 kb on + strand at 74.885 kb on + strand at 74.885 kb on + strand at 74.886 kb on - strand at 74.894 kb on - strand at 74.967 kb on - strand at 74.967 kb on - strand at 75.032 kb on + strand at 75.032 kb on + strand at 75.032 kb on + strand at 75.033 kb on - strand at 75.033 kb on - strand at 75.033 kb on - strand at 75.036 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 72,235 + ECD_00065 0.64 -0.5 72,403 - ECD_00065 0.73 -0.6 72,418 - ECD_00065 0.74 -1.1 72,761 + -0.1 72,983 - -0.2 73,011 - -0.1 73,073 + +0.4 73,073 + -0.1 73,073 + -0.2 73,073 + -0.1 73,324 + ECD_00066 0.15 -1.0 73,324 + ECD_00066 0.15 -0.4 73,326 + ECD_00066 0.15 +0.1 73,326 + ECD_00066 0.15 +0.4 73,326 + ECD_00066 0.15 -0.4 73,326 + ECD_00066 0.15 +0.0 73,401 + ECD_00066 0.24 +0.1 73,402 - ECD_00066 0.24 -0.5 73,480 + ECD_00066 0.33 -0.6 73,480 + ECD_00066 0.33 -0.4 73,529 + ECD_00066 0.38 -0.5 73,744 + ECD_00066 0.63 +0.2 73,744 + ECD_00066 0.63 -0.5 73,854 + ECD_00066 0.75 -0.4 73,862 + ECD_00066 0.76 -0.1 73,863 - ECD_00066 0.76 +0.8 73,884 + ECD_00066 0.79 +1.5 73,884 + ECD_00066 0.79 +0.2 73,884 + ECD_00066 0.79 -1.0 73,884 + ECD_00066 0.79 +0.7 73,884 + ECD_00066 0.79 -0.1 73,885 - ECD_00066 0.79 -0.5 73,970 - ECD_00066 0.89 +0.1 73,983 - +0.7 74,051 + -0.3 74,052 - -0.5 74,108 - -0.2 74,108 - -1.1 74,112 + -0.7 74,112 + -0.2 74,180 - -0.5 74,183 - -0.6 74,198 + -0.6 74,199 - -0.3 74,262 + ECD_00067 0.14 +0.4 74,579 - ECD_00067 0.55 -0.3 74,587 + ECD_00067 0.56 -0.2 74,786 + ECD_00067 0.82 +0.5 74,787 - ECD_00067 0.82 -0.4 74,787 - ECD_00067 0.82 +0.4 74,885 + +0.6 74,885 + -0.6 74,885 + -0.9 74,885 + -0.3 74,885 + +0.3 74,885 + -0.4 74,885 + -0.4 74,886 - -0.4 74,894 - -0.1 74,967 - -0.3 74,967 - +1.3 75,032 + -0.3 75,032 + +0.2 75,032 + +0.0 75,033 - +0.2 75,033 - -0.3 75,033 - +0.2 75,036 - +0.2
Or see this region's nucleotide sequence