Strain Fitness in Escherichia coli BL21 around ECD_00064

Experiment: Mixed culture, Halobacteriovorax-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00063 and ECD_00064 are separated by 284 nucleotidesECD_00064 and ECD_00065 are separated by 10 nucleotides ECD_00063: ECD_00063 - L-ribulose-5-phosphate 4-epimerase, at 68,660 to 69,355 _00063 ECD_00064: ECD_00064 - L-arabinose isomerase, at 69,640 to 71,142 _00064 ECD_00065: ECD_00065 - L-ribulokinase, at 71,153 to 72,853 _00065 Position (kb) 69 70 71 72Strain fitness (log2 ratio) -1 0 1at 68.673 kb on + strandat 68.692 kb on + strandat 68.700 kb on + strandat 68.700 kb on + strandat 68.701 kb on - strandat 68.770 kb on + strand, within ECD_00063at 68.771 kb on - strand, within ECD_00063at 68.772 kb on + strand, within ECD_00063at 68.772 kb on + strand, within ECD_00063at 68.772 kb on + strand, within ECD_00063at 68.772 kb on + strand, within ECD_00063at 68.772 kb on + strand, within ECD_00063at 68.772 kb on + strand, within ECD_00063at 68.773 kb on - strand, within ECD_00063at 68.934 kb on + strand, within ECD_00063at 69.049 kb on + strand, within ECD_00063at 69.213 kb on + strand, within ECD_00063at 69.298 kb on + strandat 69.326 kb on + strandat 69.326 kb on + strandat 69.422 kb on + strandat 69.508 kb on - strandat 69.592 kb on + strandat 69.637 kb on + strandat 69.638 kb on - strandat 69.922 kb on - strand, within ECD_00064at 70.017 kb on + strand, within ECD_00064at 70.117 kb on - strand, within ECD_00064at 70.117 kb on - strand, within ECD_00064at 70.133 kb on + strand, within ECD_00064at 70.133 kb on + strand, within ECD_00064at 70.133 kb on + strand, within ECD_00064at 70.133 kb on + strand, within ECD_00064at 70.133 kb on + strand, within ECD_00064at 70.134 kb on - strand, within ECD_00064at 70.139 kb on + strand, within ECD_00064at 70.139 kb on + strand, within ECD_00064at 70.140 kb on - strand, within ECD_00064at 70.140 kb on - strand, within ECD_00064at 70.140 kb on - strand, within ECD_00064at 70.149 kb on + strand, within ECD_00064at 70.265 kb on - strand, within ECD_00064at 70.434 kb on - strand, within ECD_00064at 70.446 kb on - strand, within ECD_00064at 70.521 kb on + strand, within ECD_00064at 70.521 kb on + strand, within ECD_00064at 70.522 kb on - strand, within ECD_00064at 70.561 kb on - strand, within ECD_00064at 70.726 kb on - strand, within ECD_00064at 70.726 kb on - strand, within ECD_00064at 70.782 kb on + strand, within ECD_00064at 70.797 kb on + strand, within ECD_00064at 70.937 kb on + strand, within ECD_00064at 70.956 kb on + strand, within ECD_00064at 71.038 kb on - strandat 71.038 kb on - strandat 71.087 kb on + strandat 71.123 kb on + strandat 71.155 kb on - strandat 71.156 kb on + strandat 71.156 kb on + strandat 71.157 kb on - strandat 71.157 kb on - strandat 71.157 kb on - strandat 71.157 kb on - strandat 71.157 kb on - strandat 71.205 kb on + strandat 71.206 kb on - strandat 71.239 kb on - strandat 71.612 kb on - strand, within ECD_00065at 71.829 kb on + strand, within ECD_00065at 71.830 kb on - strand, within ECD_00065at 71.830 kb on - strand, within ECD_00065at 71.909 kb on - strand, within ECD_00065at 71.909 kb on - strand, within ECD_00065at 71.971 kb on + strand, within ECD_00065at 71.971 kb on + strand, within ECD_00065at 71.971 kb on + strand, within ECD_00065at 71.995 kb on + strand, within ECD_00065at 72.098 kb on + strand, within ECD_00065at 72.098 kb on + strand, within ECD_00065at 72.098 kb on + strand, within ECD_00065

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1
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68,673 + -0.3
68,692 + -0.2
68,700 + -0.3
68,700 + -0.1
68,701 - -0.1
68,770 + ECD_00063 0.16 -0.2
68,771 - ECD_00063 0.16 +1.2
68,772 + ECD_00063 0.16 -0.3
68,772 + ECD_00063 0.16 -0.2
68,772 + ECD_00063 0.16 +0.8
68,772 + ECD_00063 0.16 +0.3
68,772 + ECD_00063 0.16 -0.1
68,772 + ECD_00063 0.16 -0.0
68,773 - ECD_00063 0.16 -0.3
68,934 + ECD_00063 0.39 +0.3
69,049 + ECD_00063 0.56 -0.1
69,213 + ECD_00063 0.79 -0.1
69,298 + -0.6
69,326 + -0.2
69,326 + -0.4
69,422 + -0.1
69,508 - +0.6
69,592 + -0.2
69,637 + -0.2
69,638 - +0.2
69,922 - ECD_00064 0.19 -1.1
70,017 + ECD_00064 0.25 -0.2
70,117 - ECD_00064 0.32 -0.1
70,117 - ECD_00064 0.32 -0.1
70,133 + ECD_00064 0.33 +0.5
70,133 + ECD_00064 0.33 +0.2
70,133 + ECD_00064 0.33 +0.2
70,133 + ECD_00064 0.33 +0.2
70,133 + ECD_00064 0.33 +0.2
70,134 - ECD_00064 0.33 +0.3
70,139 + ECD_00064 0.33 +0.4
70,139 + ECD_00064 0.33 -0.3
70,140 - ECD_00064 0.33 -0.4
70,140 - ECD_00064 0.33 -0.8
70,140 - ECD_00064 0.33 -0.1
70,149 + ECD_00064 0.34 -0.3
70,265 - ECD_00064 0.42 +0.0
70,434 - ECD_00064 0.53 +0.3
70,446 - ECD_00064 0.54 -0.0
70,521 + ECD_00064 0.59 -0.8
70,521 + ECD_00064 0.59 +0.2
70,522 - ECD_00064 0.59 -0.3
70,561 - ECD_00064 0.61 -0.1
70,726 - ECD_00064 0.72 +0.3
70,726 - ECD_00064 0.72 -0.7
70,782 + ECD_00064 0.76 +0.5
70,797 + ECD_00064 0.77 -0.8
70,937 + ECD_00064 0.86 +0.1
70,956 + ECD_00064 0.88 -0.0
71,038 - +0.3
71,038 - -0.1
71,087 + +0.4
71,123 + -0.1
71,155 - +0.2
71,156 + -0.5
71,156 + -0.2
71,157 - +0.6
71,157 - -0.0
71,157 - -1.0
71,157 - -0.4
71,157 - -0.2
71,205 + +0.0
71,206 - +0.3
71,239 - +0.2
71,612 - ECD_00065 0.27 -0.3
71,829 + ECD_00065 0.40 -0.0
71,830 - ECD_00065 0.40 -0.6
71,830 - ECD_00065 0.40 +0.6
71,909 - ECD_00065 0.44 +0.6
71,909 - ECD_00065 0.44 +0.0
71,971 + ECD_00065 0.48 -0.3
71,971 + ECD_00065 0.48 +0.1
71,971 + ECD_00065 0.48 +0.5
71,995 + ECD_00065 0.50 -0.1
72,098 + ECD_00065 0.56 -0.4
72,098 + ECD_00065 0.56 -1.2
72,098 + ECD_00065 0.56 +0.4

Or see this region's nucleotide sequence