Strain Fitness in Escherichia coli BL21 around ECD_00062

Experiment: Mixed culture, Halobacteriovorax-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00061 and ECD_00062 are separated by 164 nucleotidesECD_00062 and ECD_00063 are separated by 74 nucleotides ECD_00061: ECD_00061 - RNA polymerase remodeling/recycling factor ATPase; RNA polymerase-associated, ATP-dependent RNA translocase, at 63,163 to 66,069 _00061 ECD_00062: ECD_00062 - DNA polymerase II, at 66,234 to 68,585 _00062 ECD_00063: ECD_00063 - L-ribulose-5-phosphate 4-epimerase, at 68,660 to 69,355 _00063 Position (kb) 66 67 68 69Strain fitness (log2 ratio) -2 -1 0 1 2at 65.342 kb on + strand, within ECD_00061at 65.342 kb on + strand, within ECD_00061at 65.342 kb on + strand, within ECD_00061at 65.342 kb on + strand, within ECD_00061at 65.342 kb on + strand, within ECD_00061at 65.343 kb on - strand, within ECD_00061at 65.343 kb on - strand, within ECD_00061at 65.343 kb on - strand, within ECD_00061at 65.343 kb on - strand, within ECD_00061at 65.343 kb on - strand, within ECD_00061at 65.367 kb on - strand, within ECD_00061at 65.438 kb on - strand, within ECD_00061at 65.438 kb on - strand, within ECD_00061at 65.438 kb on - strand, within ECD_00061at 65.458 kb on + strand, within ECD_00061at 65.458 kb on + strand, within ECD_00061at 65.459 kb on - strand, within ECD_00061at 65.459 kb on - strand, within ECD_00061at 65.639 kb on + strand, within ECD_00061at 65.639 kb on + strand, within ECD_00061at 65.646 kb on + strand, within ECD_00061at 65.670 kb on + strand, within ECD_00061at 65.671 kb on - strand, within ECD_00061at 65.761 kb on - strand, within ECD_00061at 65.815 kb on - strandat 65.822 kb on + strandat 65.822 kb on + strandat 65.848 kb on + strandat 65.886 kb on + strandat 65.892 kb on + strandat 65.943 kb on - strandat 65.961 kb on + strandat 65.962 kb on - strandat 66.034 kb on - strandat 66.061 kb on - strandat 66.069 kb on + strandat 66.070 kb on - strandat 66.070 kb on - strandat 66.070 kb on - strandat 66.070 kb on - strandat 66.083 kb on + strandat 66.083 kb on + strandat 66.084 kb on - strandat 66.085 kb on + strandat 66.086 kb on - strandat 66.086 kb on - strandat 66.086 kb on - strandat 66.086 kb on - strandat 66.086 kb on - strandat 66.086 kb on - strandat 66.086 kb on - strandat 66.105 kb on - strandat 66.124 kb on + strandat 66.125 kb on - strandat 66.125 kb on - strandat 66.131 kb on + strandat 66.132 kb on - strandat 66.132 kb on - strandat 66.132 kb on - strandat 66.132 kb on - strandat 66.260 kb on + strandat 66.260 kb on + strandat 66.261 kb on - strandat 66.284 kb on + strandat 66.294 kb on + strandat 66.294 kb on + strandat 66.315 kb on + strandat 66.331 kb on + strandat 66.331 kb on + strandat 66.332 kb on - strandat 66.341 kb on - strandat 66.394 kb on - strandat 66.397 kb on + strandat 66.397 kb on + strandat 66.397 kb on + strandat 66.397 kb on + strandat 66.397 kb on + strandat 66.397 kb on + strandat 66.397 kb on + strandat 66.401 kb on + strandat 66.478 kb on - strand, within ECD_00062at 66.494 kb on + strand, within ECD_00062at 66.495 kb on - strand, within ECD_00062at 66.535 kb on + strand, within ECD_00062at 66.592 kb on + strand, within ECD_00062at 66.593 kb on - strand, within ECD_00062at 66.593 kb on - strand, within ECD_00062at 66.593 kb on - strand, within ECD_00062at 66.693 kb on - strand, within ECD_00062at 66.816 kb on + strand, within ECD_00062at 66.816 kb on + strand, within ECD_00062at 66.958 kb on + strand, within ECD_00062at 66.963 kb on - strand, within ECD_00062at 67.088 kb on - strand, within ECD_00062at 67.088 kb on - strand, within ECD_00062at 67.325 kb on + strand, within ECD_00062at 67.326 kb on - strand, within ECD_00062at 67.326 kb on - strand, within ECD_00062at 67.351 kb on + strand, within ECD_00062at 67.352 kb on - strand, within ECD_00062at 67.429 kb on + strand, within ECD_00062at 67.429 kb on + strand, within ECD_00062at 67.430 kb on - strand, within ECD_00062at 67.446 kb on - strand, within ECD_00062at 67.592 kb on + strand, within ECD_00062at 67.594 kb on + strand, within ECD_00062at 67.595 kb on - strand, within ECD_00062at 67.942 kb on + strand, within ECD_00062at 67.942 kb on + strand, within ECD_00062at 67.942 kb on + strand, within ECD_00062at 67.975 kb on - strand, within ECD_00062at 67.996 kb on + strand, within ECD_00062at 67.996 kb on + strand, within ECD_00062at 67.997 kb on - strand, within ECD_00062at 68.048 kb on + strand, within ECD_00062at 68.048 kb on + strand, within ECD_00062at 68.049 kb on - strand, within ECD_00062at 68.049 kb on - strand, within ECD_00062at 68.050 kb on + strand, within ECD_00062at 68.050 kb on + strand, within ECD_00062at 68.050 kb on + strand, within ECD_00062at 68.124 kb on - strand, within ECD_00062at 68.198 kb on + strand, within ECD_00062at 68.245 kb on + strand, within ECD_00062at 68.276 kb on - strand, within ECD_00062at 68.312 kb on - strand, within ECD_00062at 68.420 kb on + strandat 68.591 kb on - strandat 68.617 kb on + strandat 68.673 kb on + strandat 68.692 kb on + strandat 68.700 kb on + strandat 68.700 kb on + strandat 68.701 kb on - strandat 68.770 kb on + strand, within ECD_00063at 68.771 kb on - strand, within ECD_00063at 68.772 kb on + strand, within ECD_00063at 68.772 kb on + strand, within ECD_00063at 68.772 kb on + strand, within ECD_00063at 68.772 kb on + strand, within ECD_00063at 68.772 kb on + strand, within ECD_00063at 68.772 kb on + strand, within ECD_00063at 68.773 kb on - strand, within ECD_00063at 68.934 kb on + strand, within ECD_00063at 69.049 kb on + strand, within ECD_00063at 69.213 kb on + strand, within ECD_00063at 69.298 kb on + strandat 69.326 kb on + strandat 69.326 kb on + strandat 69.422 kb on + strandat 69.508 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1
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65,342 + ECD_00061 0.75 -0.1
65,342 + ECD_00061 0.75 +0.3
65,342 + ECD_00061 0.75 +0.1
65,342 + ECD_00061 0.75 -0.8
65,342 + ECD_00061 0.75 -0.9
65,343 - ECD_00061 0.75 -0.1
65,343 - ECD_00061 0.75 +0.2
65,343 - ECD_00061 0.75 -0.2
65,343 - ECD_00061 0.75 -0.1
65,343 - ECD_00061 0.75 +0.2
65,367 - ECD_00061 0.76 -0.3
65,438 - ECD_00061 0.78 -0.5
65,438 - ECD_00061 0.78 -0.8
65,438 - ECD_00061 0.78 -0.8
65,458 + ECD_00061 0.79 -0.9
65,458 + ECD_00061 0.79 +0.2
65,459 - ECD_00061 0.79 -0.2
65,459 - ECD_00061 0.79 -0.0
65,639 + ECD_00061 0.85 +0.0
65,639 + ECD_00061 0.85 -0.1
65,646 + ECD_00061 0.85 -0.0
65,670 + ECD_00061 0.86 -0.1
65,671 - ECD_00061 0.86 -1.1
65,761 - ECD_00061 0.89 -0.2
65,815 - -0.1
65,822 + -0.1
65,822 + -0.2
65,848 + -0.0
65,886 + +0.3
65,892 + -0.0
65,943 - -0.4
65,961 + -0.2
65,962 - -0.6
66,034 - -0.3
66,061 - +0.1
66,069 + -0.3
66,070 - +0.8
66,070 - -0.2
66,070 - -0.5
66,070 - -0.6
66,083 + -0.2
66,083 + -0.1
66,084 - +0.6
66,085 + -0.6
66,086 - -0.3
66,086 - -0.1
66,086 - -0.2
66,086 - +0.0
66,086 - +0.4
66,086 - -0.2
66,086 - -0.4
66,105 - +0.5
66,124 + -0.3
66,125 - -0.0
66,125 - -0.2
66,131 + +0.2
66,132 - -0.2
66,132 - -0.3
66,132 - -0.5
66,132 - -0.2
66,260 + -0.1
66,260 + +0.6
66,261 - +0.1
66,284 + +0.2
66,294 + +0.1
66,294 + +0.3
66,315 + -0.0
66,331 + +0.2
66,331 + -0.1
66,332 - +0.1
66,341 - +0.0
66,394 - +0.0
66,397 + +0.9
66,397 + -0.8
66,397 + +0.1
66,397 + -0.2
66,397 + +0.2
66,397 + +0.6
66,397 + -0.1
66,401 + +0.6
66,478 - ECD_00062 0.10 +2.6
66,494 + ECD_00062 0.11 +0.6
66,495 - ECD_00062 0.11 -0.0
66,535 + ECD_00062 0.13 -1.0
66,592 + ECD_00062 0.15 -0.4
66,593 - ECD_00062 0.15 -0.2
66,593 - ECD_00062 0.15 +1.1
66,593 - ECD_00062 0.15 +0.5
66,693 - ECD_00062 0.20 -0.3
66,816 + ECD_00062 0.25 +0.0
66,816 + ECD_00062 0.25 -0.0
66,958 + ECD_00062 0.31 -0.2
66,963 - ECD_00062 0.31 -0.4
67,088 - ECD_00062 0.36 -0.6
67,088 - ECD_00062 0.36 -0.0
67,325 + ECD_00062 0.46 -1.0
67,326 - ECD_00062 0.46 +0.4
67,326 - ECD_00062 0.46 -0.2
67,351 + ECD_00062 0.47 +0.3
67,352 - ECD_00062 0.48 -0.5
67,429 + ECD_00062 0.51 +0.1
67,429 + ECD_00062 0.51 +0.5
67,430 - ECD_00062 0.51 -0.9
67,446 - ECD_00062 0.52 -0.2
67,592 + ECD_00062 0.58 -0.0
67,594 + ECD_00062 0.58 -0.1
67,595 - ECD_00062 0.58 -0.1
67,942 + ECD_00062 0.73 +0.1
67,942 + ECD_00062 0.73 -0.2
67,942 + ECD_00062 0.73 -0.1
67,975 - ECD_00062 0.74 -0.2
67,996 + ECD_00062 0.75 -0.7
67,996 + ECD_00062 0.75 +0.4
67,997 - ECD_00062 0.75 -0.0
68,048 + ECD_00062 0.77 +1.3
68,048 + ECD_00062 0.77 -0.1
68,049 - ECD_00062 0.77 +0.3
68,049 - ECD_00062 0.77 -0.1
68,050 + ECD_00062 0.77 -0.2
68,050 + ECD_00062 0.77 -0.6
68,050 + ECD_00062 0.77 +2.2
68,124 - ECD_00062 0.80 -0.4
68,198 + ECD_00062 0.84 +0.3
68,245 + ECD_00062 0.86 +0.1
68,276 - ECD_00062 0.87 -2.1
68,312 - ECD_00062 0.88 -0.7
68,420 + -0.2
68,591 - +0.0
68,617 + -0.0
68,673 + -0.3
68,692 + -0.2
68,700 + -0.3
68,700 + -0.1
68,701 - -0.1
68,770 + ECD_00063 0.16 -0.2
68,771 - ECD_00063 0.16 +1.2
68,772 + ECD_00063 0.16 -0.3
68,772 + ECD_00063 0.16 -0.2
68,772 + ECD_00063 0.16 +0.8
68,772 + ECD_00063 0.16 +0.3
68,772 + ECD_00063 0.16 -0.1
68,772 + ECD_00063 0.16 -0.0
68,773 - ECD_00063 0.16 -0.3
68,934 + ECD_00063 0.39 +0.3
69,049 + ECD_00063 0.56 -0.1
69,213 + ECD_00063 0.79 -0.1
69,298 + -0.6
69,326 + -0.2
69,326 + -0.4
69,422 + -0.1
69,508 - +0.6

Or see this region's nucleotide sequence