Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2146

Experiment: Kang_ML4_MIT diversity barseq

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_2145 and B158DRAFT_2146 are separated by 137 nucleotidesB158DRAFT_2146 and B158DRAFT_2147 are separated by 287 nucleotidesB158DRAFT_2147 and B158DRAFT_2148 are separated by 256 nucleotides B158DRAFT_2145: B158DRAFT_2145 - pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form, at 281,196 to 282,854 _2145 B158DRAFT_2146: B158DRAFT_2146 - dihydrolipoamide dehydrogenase, at 282,992 to 284,410 _2146 B158DRAFT_2147: B158DRAFT_2147 - hypothetical protein, at 284,698 to 284,814 _2147 B158DRAFT_2148: B158DRAFT_2148 - Predicted permeases, at 285,071 to 286,009 _2148 Position (kb) 282 283 284 285Strain fitness (log2 ratio) -2 -1 0 1 2 3at 282.030 kb on - strand, within B158DRAFT_2145at 282.057 kb on + strand, within B158DRAFT_2145at 282.065 kb on - strand, within B158DRAFT_2145at 282.083 kb on + strand, within B158DRAFT_2145at 282.320 kb on + strand, within B158DRAFT_2145at 282.320 kb on + strand, within B158DRAFT_2145at 282.389 kb on + strand, within B158DRAFT_2145at 282.396 kb on - strand, within B158DRAFT_2145at 282.483 kb on - strand, within B158DRAFT_2145at 282.516 kb on + strand, within B158DRAFT_2145at 282.588 kb on + strand, within B158DRAFT_2145at 282.609 kb on - strand, within B158DRAFT_2145at 282.626 kb on - strand, within B158DRAFT_2145at 282.640 kb on + strand, within B158DRAFT_2145at 282.640 kb on + strand, within B158DRAFT_2145at 282.648 kb on - strand, within B158DRAFT_2145at 282.661 kb on + strand, within B158DRAFT_2145at 282.698 kb on + strandat 282.735 kb on + strandat 282.752 kb on + strandat 282.760 kb on - strandat 282.841 kb on - strandat 284.383 kb on + strandat 284.494 kb on + strandat 284.494 kb on + strandat 284.494 kb on + strandat 284.494 kb on + strandat 284.502 kb on - strandat 284.580 kb on + strandat 284.681 kb on - strandat 284.695 kb on + strandat 284.696 kb on + strandat 284.848 kb on - strandat 284.852 kb on + strandat 284.862 kb on - strandat 284.978 kb on - strandat 284.978 kb on - strandat 284.988 kb on + strandat 284.996 kb on - strandat 285.044 kb on - strandat 285.068 kb on + strandat 285.068 kb on + strandat 285.068 kb on + strandat 285.068 kb on + strandat 285.076 kb on - strandat 285.076 kb on - strandat 285.076 kb on - strandat 285.076 kb on - strandat 285.076 kb on - strandat 285.106 kb on + strandat 285.142 kb on - strandat 285.176 kb on + strand, within B158DRAFT_2148at 285.189 kb on + strand, within B158DRAFT_2148at 285.346 kb on + strand, within B158DRAFT_2148at 285.346 kb on + strand, within B158DRAFT_2148at 285.368 kb on + strand, within B158DRAFT_2148at 285.376 kb on - strand, within B158DRAFT_2148at 285.378 kb on + strand, within B158DRAFT_2148at 285.390 kb on + strand, within B158DRAFT_2148at 285.393 kb on - strand, within B158DRAFT_2148at 285.395 kb on + strand, within B158DRAFT_2148at 285.395 kb on + strand, within B158DRAFT_2148at 285.395 kb on + strand, within B158DRAFT_2148at 285.395 kb on + strand, within B158DRAFT_2148at 285.395 kb on + strand, within B158DRAFT_2148at 285.395 kb on + strand, within B158DRAFT_2148at 285.395 kb on + strand, within B158DRAFT_2148at 285.395 kb on + strand, within B158DRAFT_2148at 285.395 kb on + strand, within B158DRAFT_2148at 285.395 kb on + strand, within B158DRAFT_2148at 285.395 kb on + strand, within B158DRAFT_2148at 285.395 kb on + strand, within B158DRAFT_2148at 285.395 kb on + strand, within B158DRAFT_2148at 285.403 kb on - strand, within B158DRAFT_2148at 285.403 kb on - strand, within B158DRAFT_2148at 285.403 kb on - strand, within B158DRAFT_2148at 285.403 kb on - strand, within B158DRAFT_2148at 285.403 kb on - strand, within B158DRAFT_2148at 285.403 kb on - strand, within B158DRAFT_2148at 285.403 kb on - strand, within B158DRAFT_2148

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Kang_ML4_MIT diversity barseq
remove
282,030 - B158DRAFT_2145 0.50 +2.5
282,057 + B158DRAFT_2145 0.52 +1.5
282,065 - B158DRAFT_2145 0.52 +0.2
282,083 + B158DRAFT_2145 0.53 +2.2
282,320 + B158DRAFT_2145 0.68 +3.0
282,320 + B158DRAFT_2145 0.68 -0.1
282,389 + B158DRAFT_2145 0.72 +0.8
282,396 - B158DRAFT_2145 0.72 +0.7
282,483 - B158DRAFT_2145 0.78 +3.2
282,516 + B158DRAFT_2145 0.80 +1.5
282,588 + B158DRAFT_2145 0.84 -0.1
282,609 - B158DRAFT_2145 0.85 +0.9
282,626 - B158DRAFT_2145 0.86 +3.1
282,640 + B158DRAFT_2145 0.87 +2.1
282,640 + B158DRAFT_2145 0.87 +2.9
282,648 - B158DRAFT_2145 0.88 +2.5
282,661 + B158DRAFT_2145 0.88 +0.9
282,698 + -0.7
282,735 + +2.6
282,752 + +2.1
282,760 - +1.8
282,841 - +1.5
284,383 + +1.4
284,494 + +0.1
284,494 + +0.1
284,494 + -0.1
284,494 + -0.1
284,502 - -0.3
284,580 + -0.0
284,681 - -0.0
284,695 + +0.2
284,696 + -0.3
284,848 - -0.6
284,852 + -1.0
284,862 - +0.1
284,978 - +0.0
284,978 - -0.1
284,988 + -0.4
284,996 - -0.3
285,044 - -0.6
285,068 + -0.1
285,068 + +0.7
285,068 + -1.2
285,068 + -0.3
285,076 - -0.5
285,076 - -0.6
285,076 - -0.6
285,076 - -0.1
285,076 - +0.1
285,106 + +0.2
285,142 - +0.9
285,176 + B158DRAFT_2148 0.11 -0.2
285,189 + B158DRAFT_2148 0.13 -0.4
285,346 + B158DRAFT_2148 0.29 -0.0
285,346 + B158DRAFT_2148 0.29 +0.7
285,368 + B158DRAFT_2148 0.32 -1.9
285,376 - B158DRAFT_2148 0.32 -0.1
285,378 + B158DRAFT_2148 0.33 +0.2
285,390 + B158DRAFT_2148 0.34 +0.0
285,393 - B158DRAFT_2148 0.34 -0.1
285,395 + B158DRAFT_2148 0.35 -0.2
285,395 + B158DRAFT_2148 0.35 -0.7
285,395 + B158DRAFT_2148 0.35 +0.5
285,395 + B158DRAFT_2148 0.35 -0.6
285,395 + B158DRAFT_2148 0.35 +0.1
285,395 + B158DRAFT_2148 0.35 -0.3
285,395 + B158DRAFT_2148 0.35 -0.3
285,395 + B158DRAFT_2148 0.35 -0.7
285,395 + B158DRAFT_2148 0.35 +0.7
285,395 + B158DRAFT_2148 0.35 -0.6
285,395 + B158DRAFT_2148 0.35 +0.0
285,395 + B158DRAFT_2148 0.35 -1.5
285,395 + B158DRAFT_2148 0.35 -0.4
285,403 - B158DRAFT_2148 0.35 +0.1
285,403 - B158DRAFT_2148 0.35 +0.0
285,403 - B158DRAFT_2148 0.35 -1.1
285,403 - B158DRAFT_2148 0.35 -0.2
285,403 - B158DRAFT_2148 0.35 -1.1
285,403 - B158DRAFT_2148 0.35 -0.5
285,403 - B158DRAFT_2148 0.35 +0.3

Or see this region's nucleotide sequence