Experiment: Kang_ML4_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_2070 and B158DRAFT_2071 overlap by 8 nucleotides B158DRAFT_2071 and B158DRAFT_2072 are separated by 6 nucleotides
B158DRAFT_2070: B158DRAFT_2070 - TIGR02099 family protein, at 205,521 to 209,510
_2070
B158DRAFT_2071: B158DRAFT_2071 - Predicted amidohydrolase, at 209,503 to 210,324
_2071
B158DRAFT_2072: B158DRAFT_2072 - microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62, at 210,331 to 211,767
_2072
Position (kb) 209
210
211 Strain fitness (log2 ratio) -1
0
1 at 208.546 kb on - strand, within B158DRAFT_2070 at 208.608 kb on + strand, within B158DRAFT_2070 at 208.631 kb on - strand, within B158DRAFT_2070 at 208.647 kb on + strand, within B158DRAFT_2070 at 208.723 kb on + strand, within B158DRAFT_2070 at 208.731 kb on - strand, within B158DRAFT_2070 at 208.731 kb on - strand, within B158DRAFT_2070 at 208.807 kb on - strand, within B158DRAFT_2070 at 208.869 kb on - strand, within B158DRAFT_2070 at 208.875 kb on + strand, within B158DRAFT_2070 at 209.014 kb on + strand, within B158DRAFT_2070 at 209.026 kb on + strand, within B158DRAFT_2070 at 209.097 kb on - strand, within B158DRAFT_2070 at 209.134 kb on + strand at 209.134 kb on + strand at 209.232 kb on + strand at 209.264 kb on + strand at 209.264 kb on + strand at 209.272 kb on - strand at 209.530 kb on + strand at 209.538 kb on - strand at 209.565 kb on + strand at 209.565 kb on + strand at 209.573 kb on - strand at 209.573 kb on - strand at 209.573 kb on - strand at 209.573 kb on - strand at 209.624 kb on - strand, within B158DRAFT_2071 at 209.704 kb on + strand, within B158DRAFT_2071 at 209.704 kb on + strand, within B158DRAFT_2071 at 209.704 kb on + strand, within B158DRAFT_2071 at 209.704 kb on + strand, within B158DRAFT_2071 at 209.712 kb on - strand, within B158DRAFT_2071 at 209.816 kb on + strand, within B158DRAFT_2071 at 209.824 kb on - strand, within B158DRAFT_2071 at 209.828 kb on + strand, within B158DRAFT_2071 at 209.828 kb on + strand, within B158DRAFT_2071 at 209.828 kb on + strand, within B158DRAFT_2071 at 209.828 kb on + strand, within B158DRAFT_2071 at 209.836 kb on - strand, within B158DRAFT_2071 at 209.836 kb on - strand, within B158DRAFT_2071 at 209.875 kb on + strand, within B158DRAFT_2071 at 209.918 kb on - strand, within B158DRAFT_2071 at 209.983 kb on - strand, within B158DRAFT_2071 at 209.991 kb on - strand, within B158DRAFT_2071 at 210.023 kb on + strand, within B158DRAFT_2071 at 210.030 kb on + strand, within B158DRAFT_2071 at 210.180 kb on + strand, within B158DRAFT_2071 at 210.249 kb on - strand at 210.259 kb on - strand at 210.319 kb on + strand at 210.319 kb on + strand at 210.327 kb on - strand at 210.538 kb on - strand, within B158DRAFT_2072 at 210.599 kb on - strand, within B158DRAFT_2072 at 210.701 kb on + strand, within B158DRAFT_2072 at 210.714 kb on - strand, within B158DRAFT_2072 at 210.820 kb on + strand, within B158DRAFT_2072 at 210.929 kb on - strand, within B158DRAFT_2072 at 210.935 kb on + strand, within B158DRAFT_2072 at 210.940 kb on + strand, within B158DRAFT_2072 at 210.940 kb on + strand, within B158DRAFT_2072 at 210.943 kb on - strand, within B158DRAFT_2072 at 210.943 kb on - strand, within B158DRAFT_2072 at 210.948 kb on - strand, within B158DRAFT_2072 at 210.948 kb on - strand, within B158DRAFT_2072 at 210.948 kb on - strand, within B158DRAFT_2072 at 210.972 kb on + strand, within B158DRAFT_2072 at 210.975 kb on - strand, within B158DRAFT_2072 at 210.982 kb on + strand, within B158DRAFT_2072 at 211.054 kb on + strand, within B158DRAFT_2072 at 211.054 kb on + strand, within B158DRAFT_2072 at 211.054 kb on + strand, within B158DRAFT_2072 at 211.062 kb on - strand, within B158DRAFT_2072 at 211.062 kb on - strand, within B158DRAFT_2072 at 211.062 kb on - strand, within B158DRAFT_2072 at 211.069 kb on + strand, within B158DRAFT_2072 at 211.069 kb on + strand, within B158DRAFT_2072 at 211.111 kb on + strand, within B158DRAFT_2072 at 211.151 kb on + strand, within B158DRAFT_2072 at 211.169 kb on + strand, within B158DRAFT_2072 at 211.210 kb on - strand, within B158DRAFT_2072 at 211.245 kb on - strand, within B158DRAFT_2072 at 211.268 kb on - strand, within B158DRAFT_2072 at 211.310 kb on - strand, within B158DRAFT_2072 at 211.310 kb on - strand, within B158DRAFT_2072
Per-strain Table
Position Strand Gene LocusTag Fraction Kang_ML4_MIT diversity barseq remove 208,546 - B158DRAFT_2070 0.76 -0.5 208,608 + B158DRAFT_2070 0.77 +0.1 208,631 - B158DRAFT_2070 0.78 +0.3 208,647 + B158DRAFT_2070 0.78 +0.4 208,723 + B158DRAFT_2070 0.80 -0.4 208,731 - B158DRAFT_2070 0.80 -0.6 208,731 - B158DRAFT_2070 0.80 -0.8 208,807 - B158DRAFT_2070 0.82 +0.9 208,869 - B158DRAFT_2070 0.84 -0.3 208,875 + B158DRAFT_2070 0.84 +0.2 209,014 + B158DRAFT_2070 0.88 -0.8 209,026 + B158DRAFT_2070 0.88 -0.4 209,097 - B158DRAFT_2070 0.90 +0.1 209,134 + -0.4 209,134 + +0.1 209,232 + -0.1 209,264 + -0.2 209,264 + -0.1 209,272 - -1.1 209,530 + -0.2 209,538 - -0.2 209,565 + -0.9 209,565 + -0.0 209,573 - -0.2 209,573 - -0.4 209,573 - +0.1 209,573 - +1.2 209,624 - B158DRAFT_2071 0.15 -0.3 209,704 + B158DRAFT_2071 0.24 -0.1 209,704 + B158DRAFT_2071 0.24 +0.2 209,704 + B158DRAFT_2071 0.24 -0.6 209,704 + B158DRAFT_2071 0.24 -0.1 209,712 - B158DRAFT_2071 0.25 +0.5 209,816 + B158DRAFT_2071 0.38 +0.6 209,824 - B158DRAFT_2071 0.39 -0.0 209,828 + B158DRAFT_2071 0.40 +0.2 209,828 + B158DRAFT_2071 0.40 +0.7 209,828 + B158DRAFT_2071 0.40 -1.6 209,828 + B158DRAFT_2071 0.40 +0.0 209,836 - B158DRAFT_2071 0.41 -0.3 209,836 - B158DRAFT_2071 0.41 +0.3 209,875 + B158DRAFT_2071 0.45 -0.2 209,918 - B158DRAFT_2071 0.50 -0.1 209,983 - B158DRAFT_2071 0.58 -0.2 209,991 - B158DRAFT_2071 0.59 +0.7 210,023 + B158DRAFT_2071 0.63 +0.9 210,030 + B158DRAFT_2071 0.64 +0.5 210,180 + B158DRAFT_2071 0.82 -0.1 210,249 - -0.0 210,259 - -0.7 210,319 + -1.7 210,319 + -0.7 210,327 - -0.2 210,538 - B158DRAFT_2072 0.14 -0.1 210,599 - B158DRAFT_2072 0.19 -0.3 210,701 + B158DRAFT_2072 0.26 +0.3 210,714 - B158DRAFT_2072 0.27 +0.2 210,820 + B158DRAFT_2072 0.34 -0.2 210,929 - B158DRAFT_2072 0.42 +0.0 210,935 + B158DRAFT_2072 0.42 +0.2 210,940 + B158DRAFT_2072 0.42 -0.5 210,940 + B158DRAFT_2072 0.42 -0.3 210,943 - B158DRAFT_2072 0.43 +0.6 210,943 - B158DRAFT_2072 0.43 -0.0 210,948 - B158DRAFT_2072 0.43 -0.7 210,948 - B158DRAFT_2072 0.43 -0.8 210,948 - B158DRAFT_2072 0.43 +0.1 210,972 + B158DRAFT_2072 0.45 +0.1 210,975 - B158DRAFT_2072 0.45 +0.8 210,982 + B158DRAFT_2072 0.45 -0.7 211,054 + B158DRAFT_2072 0.50 +0.3 211,054 + B158DRAFT_2072 0.50 +0.5 211,054 + B158DRAFT_2072 0.50 -0.6 211,062 - B158DRAFT_2072 0.51 -0.8 211,062 - B158DRAFT_2072 0.51 +0.1 211,062 - B158DRAFT_2072 0.51 +0.5 211,069 + B158DRAFT_2072 0.51 +0.2 211,069 + B158DRAFT_2072 0.51 -1.0 211,111 + B158DRAFT_2072 0.54 -0.2 211,151 + B158DRAFT_2072 0.57 -0.5 211,169 + B158DRAFT_2072 0.58 -0.9 211,210 - B158DRAFT_2072 0.61 +0.0 211,245 - B158DRAFT_2072 0.64 +0.6 211,268 - B158DRAFT_2072 0.65 -0.4 211,310 - B158DRAFT_2072 0.68 +0.4 211,310 - B158DRAFT_2072 0.68 -0.1
Or see this region's nucleotide sequence