Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1910

Experiment: Kang_ML4_MIT diversity barseq

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1908 and B158DRAFT_1909 are separated by 36 nucleotidesB158DRAFT_1909 and B158DRAFT_1910 are separated by 43 nucleotidesB158DRAFT_1910 and B158DRAFT_1911 are separated by 2 nucleotidesB158DRAFT_1911 and B158DRAFT_1912 are separated by 13 nucleotides B158DRAFT_1908: B158DRAFT_1908 - Glycine/serine hydroxymethyltransferase, at 43,760 to 45,013 _1908 B158DRAFT_1909: B158DRAFT_1909 - transcriptional regulator NrdR, at 45,050 to 45,508 _1909 B158DRAFT_1910: B158DRAFT_1910 - diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26), at 45,552 to 46,670 _1910 B158DRAFT_1911: B158DRAFT_1911 - riboflavin synthase alpha chain (EC 2.5.1.9), at 46,673 to 47,281 _1911 B158DRAFT_1912: B158DRAFT_1912 - 3,4-dihydroxy-2-butanone 4-phosphate synthase, at 47,295 to 48,413 _1912 Position (kb) 45 46 47Strain fitness (log2 ratio) -1 0 1 2 3at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.605 kb on + strand, within B158DRAFT_1908at 44.613 kb on - strand, within B158DRAFT_1908at 44.613 kb on - strand, within B158DRAFT_1908at 44.613 kb on - strand, within B158DRAFT_1908at 44.613 kb on - strand, within B158DRAFT_1908at 44.613 kb on - strand, within B158DRAFT_1908at 44.613 kb on - strand, within B158DRAFT_1908at 44.613 kb on - strand, within B158DRAFT_1908at 44.613 kb on - strand, within B158DRAFT_1908at 44.613 kb on - strand, within B158DRAFT_1908at 44.613 kb on - strand, within B158DRAFT_1908at 44.626 kb on + strand, within B158DRAFT_1908at 44.773 kb on + strand, within B158DRAFT_1908at 44.781 kb on - strand, within B158DRAFT_1908at 44.791 kb on + strand, within B158DRAFT_1908at 44.799 kb on - strand, within B158DRAFT_1908at 44.845 kb on - strand, within B158DRAFT_1908at 44.851 kb on - strand, within B158DRAFT_1908at 44.885 kb on + strand, within B158DRAFT_1908at 45.047 kb on + strandat 45.047 kb on + strandat 45.202 kb on + strand, within B158DRAFT_1909at 45.288 kb on + strand, within B158DRAFT_1909at 45.339 kb on + strand, within B158DRAFT_1909at 45.339 kb on + strand, within B158DRAFT_1909at 45.402 kb on + strand, within B158DRAFT_1909at 47.257 kb on + strandat 47.257 kb on + strandat 47.257 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Kang_ML4_MIT diversity barseq
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44,605 + B158DRAFT_1908 0.67 +0.3
44,605 + B158DRAFT_1908 0.67 -0.8
44,605 + B158DRAFT_1908 0.67 +0.3
44,605 + B158DRAFT_1908 0.67 +0.3
44,605 + B158DRAFT_1908 0.67 +0.1
44,605 + B158DRAFT_1908 0.67 +0.2
44,605 + B158DRAFT_1908 0.67 +1.3
44,605 + B158DRAFT_1908 0.67 +0.0
44,605 + B158DRAFT_1908 0.67 +1.3
44,605 + B158DRAFT_1908 0.67 +1.3
44,605 + B158DRAFT_1908 0.67 +0.3
44,605 + B158DRAFT_1908 0.67 +0.7
44,605 + B158DRAFT_1908 0.67 +0.1
44,613 - B158DRAFT_1908 0.68 +1.3
44,613 - B158DRAFT_1908 0.68 +0.9
44,613 - B158DRAFT_1908 0.68 +1.6
44,613 - B158DRAFT_1908 0.68 +2.1
44,613 - B158DRAFT_1908 0.68 +1.8
44,613 - B158DRAFT_1908 0.68 +0.6
44,613 - B158DRAFT_1908 0.68 +0.3
44,613 - B158DRAFT_1908 0.68 +1.1
44,613 - B158DRAFT_1908 0.68 +1.1
44,613 - B158DRAFT_1908 0.68 +0.4
44,626 + B158DRAFT_1908 0.69 -0.0
44,773 + B158DRAFT_1908 0.81 -0.3
44,781 - B158DRAFT_1908 0.81 +0.3
44,791 + B158DRAFT_1908 0.82 -0.1
44,799 - B158DRAFT_1908 0.83 +0.3
44,845 - B158DRAFT_1908 0.87 +0.9
44,851 - B158DRAFT_1908 0.87 +1.9
44,885 + B158DRAFT_1908 0.90 +2.2
45,047 + +1.1
45,047 + +1.9
45,202 + B158DRAFT_1909 0.33 +2.9
45,288 + B158DRAFT_1909 0.52 +2.5
45,339 + B158DRAFT_1909 0.63 +1.9
45,339 + B158DRAFT_1909 0.63 +1.9
45,402 + B158DRAFT_1909 0.77 +0.9
47,257 + +1.9
47,257 + +2.3
47,257 + +0.9

Or see this region's nucleotide sequence