Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1210

Experiment: Kang_ML4_MIT diversity barseq

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1208 and B158DRAFT_1209 overlap by 1 nucleotidesB158DRAFT_1209 and B158DRAFT_1210 are separated by 33 nucleotidesB158DRAFT_1210 and B158DRAFT_1211 are separated by 71 nucleotidesB158DRAFT_1211 and B158DRAFT_1212 are separated by 116 nucleotides B158DRAFT_1208: B158DRAFT_1208 - cystathionine beta-synthase (acetylserine-dependent) (EC 4.2.1.-), at 1,248,502 to 1,249,467 _1208 B158DRAFT_1209: B158DRAFT_1209 - hypothetical protein, at 1,249,467 to 1,249,769 _1209 B158DRAFT_1210: B158DRAFT_1210 - Cystathionine beta-lyases/cystathionine gamma-synthases, at 1,249,803 to 1,250,978 _1210 B158DRAFT_1211: B158DRAFT_1211 - Predicted transcriptional regulators, at 1,251,050 to 1,251,475 _1211 B158DRAFT_1212: B158DRAFT_1212 - Spermidine synthase, at 1,251,592 to 1,252,503 _1212 Position (kb) 1249 1250 1251Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1248.853 kb on + strand, within B158DRAFT_1208at 1248.856 kb on - strand, within B158DRAFT_1208at 1248.856 kb on - strand, within B158DRAFT_1208at 1248.891 kb on + strand, within B158DRAFT_1208at 1248.893 kb on - strand, within B158DRAFT_1208at 1249.005 kb on + strand, within B158DRAFT_1208at 1249.228 kb on - strand, within B158DRAFT_1208at 1249.282 kb on + strand, within B158DRAFT_1208at 1249.282 kb on + strand, within B158DRAFT_1208at 1249.329 kb on + strand, within B158DRAFT_1208at 1249.342 kb on + strand, within B158DRAFT_1208at 1249.342 kb on + strand, within B158DRAFT_1208at 1249.350 kb on - strand, within B158DRAFT_1208at 1249.352 kb on + strand, within B158DRAFT_1208at 1249.601 kb on + strand, within B158DRAFT_1209at 1249.601 kb on + strand, within B158DRAFT_1209at 1249.637 kb on + strand, within B158DRAFT_1209at 1249.727 kb on + strand, within B158DRAFT_1209at 1249.727 kb on + strand, within B158DRAFT_1209at 1249.742 kb on + strandat 1249.742 kb on + strandat 1249.742 kb on + strandat 1249.742 kb on + strandat 1249.742 kb on + strandat 1249.742 kb on + strandat 1249.742 kb on + strandat 1249.742 kb on + strandat 1249.742 kb on + strandat 1249.742 kb on + strandat 1249.742 kb on + strandat 1249.742 kb on + strandat 1249.742 kb on + strandat 1249.742 kb on + strandat 1249.742 kb on + strandat 1249.742 kb on + strandat 1249.750 kb on - strandat 1249.750 kb on - strandat 1249.783 kb on + strandat 1249.783 kb on + strandat 1249.783 kb on + strandat 1250.018 kb on + strand, within B158DRAFT_1210at 1250.058 kb on + strand, within B158DRAFT_1210at 1250.080 kb on + strand, within B158DRAFT_1210at 1250.095 kb on - strand, within B158DRAFT_1210at 1250.187 kb on + strand, within B158DRAFT_1210at 1250.257 kb on - strand, within B158DRAFT_1210at 1250.353 kb on - strand, within B158DRAFT_1210at 1250.597 kb on - strand, within B158DRAFT_1210at 1250.647 kb on - strand, within B158DRAFT_1210at 1250.723 kb on + strand, within B158DRAFT_1210at 1250.731 kb on - strand, within B158DRAFT_1210at 1250.840 kb on + strand, within B158DRAFT_1210at 1250.895 kb on + strandat 1250.972 kb on + strandat 1250.972 kb on - strandat 1251.097 kb on + strand, within B158DRAFT_1211at 1251.105 kb on - strand, within B158DRAFT_1211at 1251.105 kb on - strand, within B158DRAFT_1211at 1251.176 kb on + strand, within B158DRAFT_1211at 1251.203 kb on + strand, within B158DRAFT_1211at 1251.211 kb on - strand, within B158DRAFT_1211at 1251.211 kb on - strand, within B158DRAFT_1211at 1251.211 kb on - strand, within B158DRAFT_1211at 1251.249 kb on + strand, within B158DRAFT_1211at 1251.254 kb on + strand, within B158DRAFT_1211at 1251.256 kb on - strand, within B158DRAFT_1211at 1251.284 kb on - strand, within B158DRAFT_1211at 1251.324 kb on + strand, within B158DRAFT_1211at 1251.324 kb on + strand, within B158DRAFT_1211at 1251.337 kb on + strand, within B158DRAFT_1211at 1251.346 kb on + strand, within B158DRAFT_1211at 1251.354 kb on - strand, within B158DRAFT_1211at 1251.496 kb on + strandat 1251.548 kb on + strandat 1251.611 kb on + strandat 1251.611 kb on + strandat 1251.611 kb on + strandat 1251.619 kb on - strandat 1251.619 kb on - strandat 1251.619 kb on - strandat 1251.626 kb on + strandat 1251.679 kb on - strandat 1251.685 kb on - strand, within B158DRAFT_1212at 1251.765 kb on + strand, within B158DRAFT_1212at 1251.773 kb on - strand, within B158DRAFT_1212at 1251.911 kb on + strand, within B158DRAFT_1212at 1251.911 kb on + strand, within B158DRAFT_1212

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Per-strain Table

Position Strand Gene LocusTag Fraction Kang_ML4_MIT diversity barseq
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1,248,853 + B158DRAFT_1208 0.36 +3.8
1,248,856 - B158DRAFT_1208 0.37 -0.0
1,248,856 - B158DRAFT_1208 0.37 +1.0
1,248,891 + B158DRAFT_1208 0.40 -0.6
1,248,893 - B158DRAFT_1208 0.40 +1.0
1,249,005 + B158DRAFT_1208 0.52 +1.0
1,249,228 - B158DRAFT_1208 0.75 -1.0
1,249,282 + B158DRAFT_1208 0.81 +1.0
1,249,282 + B158DRAFT_1208 0.81 +1.0
1,249,329 + B158DRAFT_1208 0.86 -0.3
1,249,342 + B158DRAFT_1208 0.87 -0.0
1,249,342 + B158DRAFT_1208 0.87 +0.3
1,249,350 - B158DRAFT_1208 0.88 +2.4
1,249,352 + B158DRAFT_1208 0.88 +0.3
1,249,601 + B158DRAFT_1209 0.44 -1.2
1,249,601 + B158DRAFT_1209 0.44 +0.2
1,249,637 + B158DRAFT_1209 0.56 -0.0
1,249,727 + B158DRAFT_1209 0.86 -1.3
1,249,727 + B158DRAFT_1209 0.86 -0.2
1,249,742 + +0.3
1,249,742 + +0.0
1,249,742 + +0.0
1,249,742 + +0.0
1,249,742 + +0.1
1,249,742 + -0.5
1,249,742 + -0.5
1,249,742 + +0.3
1,249,742 + -0.3
1,249,742 + +0.8
1,249,742 + +0.5
1,249,742 + +0.1
1,249,742 + -0.1
1,249,742 + +0.5
1,249,742 + +0.5
1,249,742 + -0.4
1,249,750 - +1.0
1,249,750 - -1.3
1,249,783 + +0.1
1,249,783 + +0.1
1,249,783 + -0.2
1,250,018 + B158DRAFT_1210 0.18 +1.0
1,250,058 + B158DRAFT_1210 0.22 +1.6
1,250,080 + B158DRAFT_1210 0.24 -0.6
1,250,095 - B158DRAFT_1210 0.25 +1.4
1,250,187 + B158DRAFT_1210 0.33 +0.4
1,250,257 - B158DRAFT_1210 0.39 +3.8
1,250,353 - B158DRAFT_1210 0.47 +1.0
1,250,597 - B158DRAFT_1210 0.68 +1.0
1,250,647 - B158DRAFT_1210 0.72 +3.0
1,250,723 + B158DRAFT_1210 0.78 +1.7
1,250,731 - B158DRAFT_1210 0.79 +2.0
1,250,840 + B158DRAFT_1210 0.88 -0.0
1,250,895 + -1.2
1,250,972 + -0.1
1,250,972 - +0.6
1,251,097 + B158DRAFT_1211 0.11 +0.0
1,251,105 - B158DRAFT_1211 0.13 -0.8
1,251,105 - B158DRAFT_1211 0.13 -0.7
1,251,176 + B158DRAFT_1211 0.30 -0.6
1,251,203 + B158DRAFT_1211 0.36 +0.1
1,251,211 - B158DRAFT_1211 0.38 -0.4
1,251,211 - B158DRAFT_1211 0.38 -0.5
1,251,211 - B158DRAFT_1211 0.38 -0.4
1,251,249 + B158DRAFT_1211 0.47 +0.3
1,251,254 + B158DRAFT_1211 0.48 -0.9
1,251,256 - B158DRAFT_1211 0.48 -0.4
1,251,284 - B158DRAFT_1211 0.55 +0.3
1,251,324 + B158DRAFT_1211 0.64 -2.3
1,251,324 + B158DRAFT_1211 0.64 -0.2
1,251,337 + B158DRAFT_1211 0.67 +1.2
1,251,346 + B158DRAFT_1211 0.69 +1.2
1,251,354 - B158DRAFT_1211 0.71 -0.4
1,251,496 + -0.3
1,251,548 + -0.3
1,251,611 + +0.1
1,251,611 + -0.3
1,251,611 + -0.4
1,251,619 - -0.2
1,251,619 - +0.4
1,251,619 - -0.0
1,251,626 + -0.0
1,251,679 - +0.4
1,251,685 - B158DRAFT_1212 0.10 +0.2
1,251,765 + B158DRAFT_1212 0.19 +0.1
1,251,773 - B158DRAFT_1212 0.20 +0.1
1,251,911 + B158DRAFT_1212 0.35 +0.5
1,251,911 + B158DRAFT_1212 0.35 -0.1

Or see this region's nucleotide sequence