Experiment: Kang_ML4_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0889 and B158DRAFT_0890 are separated by 194 nucleotides B158DRAFT_0890 and B158DRAFT_0891 are separated by 248 nucleotides
B158DRAFT_0889: B158DRAFT_0889 - Small-conductance mechanosensitive channel, at 908,622 to 909,707
_0889
B158DRAFT_0890: B158DRAFT_0890 - Phosphate-selective porin, at 909,902 to 911,038
_0890
B158DRAFT_0891: B158DRAFT_0891 - ABC-type uncharacterized transport system, permease component, at 911,287 to 913,527
_0891
Position (kb) 909
910
911
912 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 908.998 kb on - strand, within B158DRAFT_0889 at 909.000 kb on + strand, within B158DRAFT_0889 at 909.028 kb on - strand, within B158DRAFT_0889 at 909.043 kb on + strand, within B158DRAFT_0889 at 909.063 kb on + strand, within B158DRAFT_0889 at 909.071 kb on - strand, within B158DRAFT_0889 at 909.118 kb on + strand, within B158DRAFT_0889 at 909.145 kb on + strand, within B158DRAFT_0889 at 909.161 kb on - strand, within B158DRAFT_0889 at 909.244 kb on + strand, within B158DRAFT_0889 at 909.325 kb on - strand, within B158DRAFT_0889 at 909.346 kb on + strand, within B158DRAFT_0889 at 909.354 kb on - strand, within B158DRAFT_0889 at 909.354 kb on - strand, within B158DRAFT_0889 at 909.354 kb on - strand, within B158DRAFT_0889 at 909.370 kb on + strand, within B158DRAFT_0889 at 909.378 kb on - strand, within B158DRAFT_0889 at 909.435 kb on + strand, within B158DRAFT_0889 at 909.435 kb on + strand, within B158DRAFT_0889 at 909.435 kb on + strand, within B158DRAFT_0889 at 909.435 kb on + strand, within B158DRAFT_0889 at 909.443 kb on - strand, within B158DRAFT_0889 at 909.443 kb on - strand, within B158DRAFT_0889 at 909.443 kb on - strand, within B158DRAFT_0889 at 909.448 kb on - strand, within B158DRAFT_0889 at 909.664 kb on + strand at 909.664 kb on + strand at 909.664 kb on + strand at 909.664 kb on + strand at 909.664 kb on + strand at 909.667 kb on - strand at 909.672 kb on - strand at 909.672 kb on - strand at 909.672 kb on - strand at 909.672 kb on - strand at 909.672 kb on - strand at 909.672 kb on - strand at 909.672 kb on - strand at 909.672 kb on - strand at 909.672 kb on - strand at 909.677 kb on - strand at 909.678 kb on + strand at 909.764 kb on - strand at 909.764 kb on - strand at 909.801 kb on + strand at 909.801 kb on + strand at 909.809 kb on - strand at 909.809 kb on - strand at 910.056 kb on - strand, within B158DRAFT_0890 at 910.107 kb on + strand, within B158DRAFT_0890 at 910.161 kb on + strand, within B158DRAFT_0890 at 910.166 kb on + strand, within B158DRAFT_0890 at 910.174 kb on - strand, within B158DRAFT_0890 at 910.275 kb on - strand, within B158DRAFT_0890 at 910.456 kb on + strand, within B158DRAFT_0890 at 910.731 kb on + strand, within B158DRAFT_0890 at 910.731 kb on + strand, within B158DRAFT_0890 at 910.912 kb on - strand, within B158DRAFT_0890 at 910.997 kb on + strand at 911.328 kb on - strand at 911.398 kb on - strand at 911.398 kb on - strand at 911.537 kb on - strand, within B158DRAFT_0891 at 911.807 kb on + strand, within B158DRAFT_0891 at 911.807 kb on + strand, within B158DRAFT_0891 at 911.807 kb on + strand, within B158DRAFT_0891 at 911.815 kb on - strand, within B158DRAFT_0891 at 911.815 kb on - strand, within B158DRAFT_0891 at 911.815 kb on - strand, within B158DRAFT_0891 at 911.815 kb on - strand, within B158DRAFT_0891 at 911.815 kb on - strand, within B158DRAFT_0891
Per-strain Table
Position Strand Gene LocusTag Fraction Kang_ML4_MIT diversity barseq remove 908,998 - B158DRAFT_0889 0.35 +0.2 909,000 + B158DRAFT_0889 0.35 -0.4 909,028 - B158DRAFT_0889 0.37 -0.1 909,043 + B158DRAFT_0889 0.39 +0.9 909,063 + B158DRAFT_0889 0.41 -0.5 909,071 - B158DRAFT_0889 0.41 -0.1 909,118 + B158DRAFT_0889 0.46 -0.0 909,145 + B158DRAFT_0889 0.48 -0.1 909,161 - B158DRAFT_0889 0.50 -1.5 909,244 + B158DRAFT_0889 0.57 -0.2 909,325 - B158DRAFT_0889 0.65 +0.5 909,346 + B158DRAFT_0889 0.67 -0.5 909,354 - B158DRAFT_0889 0.67 +0.2 909,354 - B158DRAFT_0889 0.67 +0.2 909,354 - B158DRAFT_0889 0.67 -0.0 909,370 + B158DRAFT_0889 0.69 -0.1 909,378 - B158DRAFT_0889 0.70 -0.2 909,435 + B158DRAFT_0889 0.75 +0.0 909,435 + B158DRAFT_0889 0.75 +0.7 909,435 + B158DRAFT_0889 0.75 -0.8 909,435 + B158DRAFT_0889 0.75 -0.2 909,443 - B158DRAFT_0889 0.76 -0.4 909,443 - B158DRAFT_0889 0.76 -0.7 909,443 - B158DRAFT_0889 0.76 +0.4 909,448 - B158DRAFT_0889 0.76 +0.5 909,664 + +0.7 909,664 + -0.0 909,664 + -0.1 909,664 + -0.1 909,664 + -0.4 909,667 - +0.1 909,672 - -0.1 909,672 - -0.4 909,672 - +0.3 909,672 - -0.1 909,672 - -0.4 909,672 - -0.3 909,672 - +0.8 909,672 - -0.8 909,672 - +0.1 909,677 - -1.3 909,678 + -0.5 909,764 - +0.8 909,764 - -0.2 909,801 + +0.5 909,801 + -0.0 909,809 - +0.0 909,809 - -0.6 910,056 - B158DRAFT_0890 0.14 +2.7 910,107 + B158DRAFT_0890 0.18 +1.3 910,161 + B158DRAFT_0890 0.23 +1.9 910,166 + B158DRAFT_0890 0.23 +0.9 910,174 - B158DRAFT_0890 0.24 +0.3 910,275 - B158DRAFT_0890 0.33 +2.3 910,456 + B158DRAFT_0890 0.49 +4.0 910,731 + B158DRAFT_0890 0.73 +3.0 910,731 + B158DRAFT_0890 0.73 +2.5 910,912 - B158DRAFT_0890 0.89 +3.2 910,997 + +1.5 911,328 - +1.4 911,398 - +1.5 911,398 - +0.9 911,537 - B158DRAFT_0891 0.11 +2.9 911,807 + B158DRAFT_0891 0.23 +0.9 911,807 + B158DRAFT_0891 0.23 +0.1 911,807 + B158DRAFT_0891 0.23 +0.5 911,815 - B158DRAFT_0891 0.24 +2.5 911,815 - B158DRAFT_0891 0.24 +0.3 911,815 - B158DRAFT_0891 0.24 +0.5 911,815 - B158DRAFT_0891 0.24 +1.2 911,815 - B158DRAFT_0891 0.24 +0.1
Or see this region's nucleotide sequence