Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0401

Experiment: Kang_ML4_MIT diversity barseq

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0400 and B158DRAFT_0401 are separated by 85 nucleotidesB158DRAFT_0401 and B158DRAFT_0402 are separated by 213 nucleotides B158DRAFT_0400: B158DRAFT_0400 - DNA protecting protein DprA, at 406,069 to 407,160 _0400 B158DRAFT_0401: B158DRAFT_0401 - Uncharacterized protein conserved in bacteria, at 407,246 to 407,725 _0401 B158DRAFT_0402: B158DRAFT_0402 - Thiol-disulfide isomerase and thioredoxins, at 407,939 to 408,781 _0402 Position (kb) 407 408Strain fitness (log2 ratio) -2 -1 0 1at 406.247 kb on + strand, within B158DRAFT_0400at 406.255 kb on - strand, within B158DRAFT_0400at 406.261 kb on - strand, within B158DRAFT_0400at 406.267 kb on + strand, within B158DRAFT_0400at 406.305 kb on - strand, within B158DRAFT_0400at 406.330 kb on + strand, within B158DRAFT_0400at 406.380 kb on + strand, within B158DRAFT_0400at 406.388 kb on - strand, within B158DRAFT_0400at 406.388 kb on - strand, within B158DRAFT_0400at 406.388 kb on - strand, within B158DRAFT_0400at 406.388 kb on - strand, within B158DRAFT_0400at 406.388 kb on - strand, within B158DRAFT_0400at 406.492 kb on - strand, within B158DRAFT_0400at 406.495 kb on + strand, within B158DRAFT_0400at 406.495 kb on + strand, within B158DRAFT_0400at 406.503 kb on - strand, within B158DRAFT_0400at 406.503 kb on - strand, within B158DRAFT_0400at 406.521 kb on - strand, within B158DRAFT_0400at 406.546 kb on + strand, within B158DRAFT_0400at 406.551 kb on + strand, within B158DRAFT_0400at 406.551 kb on + strand, within B158DRAFT_0400at 406.554 kb on - strand, within B158DRAFT_0400at 406.559 kb on - strand, within B158DRAFT_0400at 406.559 kb on - strand, within B158DRAFT_0400at 406.576 kb on - strand, within B158DRAFT_0400at 406.593 kb on + strand, within B158DRAFT_0400at 406.642 kb on + strand, within B158DRAFT_0400at 406.677 kb on - strand, within B158DRAFT_0400at 406.682 kb on - strand, within B158DRAFT_0400at 406.682 kb on - strand, within B158DRAFT_0400at 406.735 kb on - strand, within B158DRAFT_0400at 406.757 kb on - strand, within B158DRAFT_0400at 406.806 kb on + strand, within B158DRAFT_0400at 406.808 kb on + strand, within B158DRAFT_0400at 406.808 kb on + strand, within B158DRAFT_0400at 406.808 kb on + strand, within B158DRAFT_0400at 406.816 kb on - strand, within B158DRAFT_0400at 406.816 kb on - strand, within B158DRAFT_0400at 406.816 kb on - strand, within B158DRAFT_0400at 406.832 kb on + strand, within B158DRAFT_0400at 406.851 kb on + strand, within B158DRAFT_0400at 406.851 kb on + strand, within B158DRAFT_0400at 406.851 kb on + strand, within B158DRAFT_0400at 406.851 kb on + strand, within B158DRAFT_0400at 406.859 kb on - strand, within B158DRAFT_0400at 406.859 kb on - strand, within B158DRAFT_0400at 406.859 kb on - strand, within B158DRAFT_0400at 406.859 kb on - strand, within B158DRAFT_0400at 406.859 kb on - strand, within B158DRAFT_0400at 406.859 kb on - strand, within B158DRAFT_0400at 406.859 kb on - strand, within B158DRAFT_0400at 406.859 kb on - strand, within B158DRAFT_0400at 406.859 kb on - strand, within B158DRAFT_0400at 406.859 kb on - strand, within B158DRAFT_0400at 406.859 kb on - strand, within B158DRAFT_0400at 406.859 kb on - strand, within B158DRAFT_0400at 406.859 kb on - strand, within B158DRAFT_0400at 407.048 kb on + strand, within B158DRAFT_0400at 407.048 kb on + strand, within B158DRAFT_0400at 407.056 kb on - strandat 407.056 kb on - strandat 407.056 kb on - strandat 407.056 kb on - strandat 407.056 kb on - strandat 407.056 kb on - strandat 407.066 kb on - strandat 407.087 kb on + strandat 407.215 kb on + strandat 407.223 kb on - strandat 407.223 kb on - strandat 407.229 kb on + strandat 407.229 kb on + strandat 407.229 kb on + strandat 407.229 kb on + strandat 407.229 kb on + strandat 407.229 kb on + strandat 407.237 kb on - strandat 407.237 kb on - strandat 407.237 kb on - strandat 407.237 kb on - strandat 407.237 kb on - strandat 407.237 kb on - strandat 407.237 kb on - strandat 407.255 kb on + strandat 407.418 kb on + strand, within B158DRAFT_0401at 407.453 kb on + strand, within B158DRAFT_0401at 407.477 kb on + strand, within B158DRAFT_0401at 407.504 kb on + strand, within B158DRAFT_0401at 407.510 kb on + strand, within B158DRAFT_0401at 407.511 kb on + strand, within B158DRAFT_0401at 407.523 kb on + strand, within B158DRAFT_0401at 407.523 kb on + strand, within B158DRAFT_0401at 407.523 kb on + strand, within B158DRAFT_0401at 407.523 kb on + strand, within B158DRAFT_0401at 407.523 kb on + strand, within B158DRAFT_0401at 407.523 kb on + strand, within B158DRAFT_0401at 407.523 kb on + strand, within B158DRAFT_0401at 407.526 kb on - strand, within B158DRAFT_0401at 407.531 kb on - strand, within B158DRAFT_0401at 407.531 kb on - strand, within B158DRAFT_0401at 407.531 kb on - strand, within B158DRAFT_0401at 407.531 kb on - strand, within B158DRAFT_0401at 407.531 kb on - strand, within B158DRAFT_0401at 407.712 kb on - strandat 407.742 kb on + strandat 407.745 kb on - strandat 407.755 kb on + strandat 407.755 kb on + strandat 407.755 kb on + strandat 407.755 kb on + strandat 407.763 kb on - strandat 407.763 kb on - strandat 407.777 kb on + strandat 407.777 kb on + strandat 407.785 kb on - strandat 407.786 kb on - strandat 407.859 kb on - strandat 407.859 kb on - strandat 407.895 kb on + strandat 407.957 kb on + strandat 408.012 kb on + strandat 408.012 kb on + strandat 408.106 kb on + strand, within B158DRAFT_0402at 408.106 kb on + strand, within B158DRAFT_0402at 408.119 kb on + strand, within B158DRAFT_0402at 408.119 kb on + strand, within B158DRAFT_0402at 408.119 kb on + strand, within B158DRAFT_0402at 408.127 kb on - strand, within B158DRAFT_0402at 408.127 kb on - strand, within B158DRAFT_0402at 408.127 kb on - strand, within B158DRAFT_0402at 408.132 kb on - strand, within B158DRAFT_0402at 408.132 kb on - strand, within B158DRAFT_0402at 408.209 kb on + strand, within B158DRAFT_0402at 408.219 kb on + strand, within B158DRAFT_0402at 408.260 kb on + strand, within B158DRAFT_0402at 408.268 kb on - strand, within B158DRAFT_0402at 408.289 kb on - strand, within B158DRAFT_0402at 408.299 kb on - strand, within B158DRAFT_0402at 408.328 kb on + strand, within B158DRAFT_0402at 408.328 kb on + strand, within B158DRAFT_0402at 408.328 kb on + strand, within B158DRAFT_0402at 408.328 kb on + strand, within B158DRAFT_0402at 408.336 kb on - strand, within B158DRAFT_0402at 408.336 kb on - strand, within B158DRAFT_0402at 408.336 kb on - strand, within B158DRAFT_0402at 408.338 kb on + strand, within B158DRAFT_0402at 408.338 kb on + strand, within B158DRAFT_0402at 408.346 kb on - strand, within B158DRAFT_0402at 408.381 kb on - strand, within B158DRAFT_0402at 408.399 kb on + strand, within B158DRAFT_0402at 408.404 kb on + strand, within B158DRAFT_0402at 408.407 kb on - strand, within B158DRAFT_0402at 408.414 kb on + strand, within B158DRAFT_0402at 408.422 kb on - strand, within B158DRAFT_0402at 408.448 kb on - strand, within B158DRAFT_0402at 408.530 kb on + strand, within B158DRAFT_0402at 408.537 kb on + strand, within B158DRAFT_0402at 408.583 kb on + strand, within B158DRAFT_0402at 408.589 kb on + strand, within B158DRAFT_0402at 408.591 kb on - strand, within B158DRAFT_0402at 408.597 kb on - strand, within B158DRAFT_0402at 408.611 kb on + strand, within B158DRAFT_0402at 408.611 kb on + strand, within B158DRAFT_0402at 408.619 kb on - strand, within B158DRAFT_0402at 408.619 kb on - strand, within B158DRAFT_0402at 408.619 kb on - strand, within B158DRAFT_0402

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Per-strain Table

Position Strand Gene LocusTag Fraction Kang_ML4_MIT diversity barseq
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406,247 + B158DRAFT_0400 0.16 -0.4
406,255 - B158DRAFT_0400 0.17 +0.2
406,261 - B158DRAFT_0400 0.18 +0.1
406,267 + B158DRAFT_0400 0.18 -0.5
406,305 - B158DRAFT_0400 0.22 -0.5
406,330 + B158DRAFT_0400 0.24 -0.3
406,380 + B158DRAFT_0400 0.28 +0.0
406,388 - B158DRAFT_0400 0.29 -2.3
406,388 - B158DRAFT_0400 0.29 -0.7
406,388 - B158DRAFT_0400 0.29 -0.1
406,388 - B158DRAFT_0400 0.29 +0.4
406,388 - B158DRAFT_0400 0.29 -0.1
406,492 - B158DRAFT_0400 0.39 -0.4
406,495 + B158DRAFT_0400 0.39 -0.2
406,495 + B158DRAFT_0400 0.39 +0.0
406,503 - B158DRAFT_0400 0.40 +0.1
406,503 - B158DRAFT_0400 0.40 +0.1
406,521 - B158DRAFT_0400 0.41 -0.1
406,546 + B158DRAFT_0400 0.44 -0.1
406,551 + B158DRAFT_0400 0.44 -1.0
406,551 + B158DRAFT_0400 0.44 +0.0
406,554 - B158DRAFT_0400 0.44 +0.0
406,559 - B158DRAFT_0400 0.45 +0.1
406,559 - B158DRAFT_0400 0.45 -0.0
406,576 - B158DRAFT_0400 0.46 -0.1
406,593 + B158DRAFT_0400 0.48 -0.8
406,642 + B158DRAFT_0400 0.52 -0.4
406,677 - B158DRAFT_0400 0.56 -0.2
406,682 - B158DRAFT_0400 0.56 -0.3
406,682 - B158DRAFT_0400 0.56 -0.4
406,735 - B158DRAFT_0400 0.61 -0.5
406,757 - B158DRAFT_0400 0.63 -0.9
406,806 + B158DRAFT_0400 0.67 -0.1
406,808 + B158DRAFT_0400 0.68 -0.9
406,808 + B158DRAFT_0400 0.68 -0.2
406,808 + B158DRAFT_0400 0.68 -0.2
406,816 - B158DRAFT_0400 0.68 -0.2
406,816 - B158DRAFT_0400 0.68 -0.8
406,816 - B158DRAFT_0400 0.68 -0.4
406,832 + B158DRAFT_0400 0.70 +0.5
406,851 + B158DRAFT_0400 0.72 -1.7
406,851 + B158DRAFT_0400 0.72 +1.2
406,851 + B158DRAFT_0400 0.72 -1.4
406,851 + B158DRAFT_0400 0.72 +0.1
406,859 - B158DRAFT_0400 0.72 -0.4
406,859 - B158DRAFT_0400 0.72 -2.7
406,859 - B158DRAFT_0400 0.72 -0.5
406,859 - B158DRAFT_0400 0.72 +0.9
406,859 - B158DRAFT_0400 0.72 -0.3
406,859 - B158DRAFT_0400 0.72 -0.5
406,859 - B158DRAFT_0400 0.72 -0.9
406,859 - B158DRAFT_0400 0.72 +0.2
406,859 - B158DRAFT_0400 0.72 -0.3
406,859 - B158DRAFT_0400 0.72 +0.0
406,859 - B158DRAFT_0400 0.72 +0.3
406,859 - B158DRAFT_0400 0.72 -0.3
406,859 - B158DRAFT_0400 0.72 -0.2
407,048 + B158DRAFT_0400 0.90 -0.1
407,048 + B158DRAFT_0400 0.90 -0.1
407,056 - +0.3
407,056 - -0.4
407,056 - +1.0
407,056 - +0.0
407,056 - +0.5
407,056 - -0.3
407,066 - -0.0
407,087 + -0.5
407,215 + -0.7
407,223 - -0.2
407,223 - +0.1
407,229 + -0.2
407,229 + -0.7
407,229 + -0.1
407,229 + -0.6
407,229 + -0.3
407,229 + -0.1
407,237 - -0.0
407,237 - +0.0
407,237 - +0.6
407,237 - +0.4
407,237 - -0.4
407,237 - -0.0
407,237 - +0.7
407,255 + +0.3
407,418 + B158DRAFT_0401 0.36 -1.2
407,453 + B158DRAFT_0401 0.43 -1.0
407,477 + B158DRAFT_0401 0.48 -0.5
407,504 + B158DRAFT_0401 0.54 -0.4
407,510 + B158DRAFT_0401 0.55 -0.7
407,511 + B158DRAFT_0401 0.55 -0.5
407,523 + B158DRAFT_0401 0.58 -0.2
407,523 + B158DRAFT_0401 0.58 +0.1
407,523 + B158DRAFT_0401 0.58 -0.2
407,523 + B158DRAFT_0401 0.58 -0.0
407,523 + B158DRAFT_0401 0.58 +0.0
407,523 + B158DRAFT_0401 0.58 -0.2
407,523 + B158DRAFT_0401 0.58 +0.2
407,526 - B158DRAFT_0401 0.58 +0.1
407,531 - B158DRAFT_0401 0.59 -0.2
407,531 - B158DRAFT_0401 0.59 +0.0
407,531 - B158DRAFT_0401 0.59 -0.5
407,531 - B158DRAFT_0401 0.59 +0.3
407,531 - B158DRAFT_0401 0.59 -0.4
407,712 - -0.4
407,742 + +0.1
407,745 - -0.0
407,755 + -0.1
407,755 + +0.1
407,755 + -0.2
407,755 + -1.2
407,763 - +0.1
407,763 - +0.9
407,777 + -0.4
407,777 + -0.3
407,785 - -0.1
407,786 - +0.3
407,859 - -0.1
407,859 - +0.1
407,895 + -2.2
407,957 + -0.6
408,012 + +0.0
408,012 + -0.9
408,106 + B158DRAFT_0402 0.20 +0.2
408,106 + B158DRAFT_0402 0.20 +0.4
408,119 + B158DRAFT_0402 0.21 -0.4
408,119 + B158DRAFT_0402 0.21 -0.6
408,119 + B158DRAFT_0402 0.21 -0.6
408,127 - B158DRAFT_0402 0.22 -0.3
408,127 - B158DRAFT_0402 0.22 -0.4
408,127 - B158DRAFT_0402 0.22 -1.1
408,132 - B158DRAFT_0402 0.23 -0.0
408,132 - B158DRAFT_0402 0.23 +0.2
408,209 + B158DRAFT_0402 0.32 +0.3
408,219 + B158DRAFT_0402 0.33 -0.1
408,260 + B158DRAFT_0402 0.38 -0.3
408,268 - B158DRAFT_0402 0.39 -0.6
408,289 - B158DRAFT_0402 0.42 +0.3
408,299 - B158DRAFT_0402 0.43 -0.8
408,328 + B158DRAFT_0402 0.46 -0.2
408,328 + B158DRAFT_0402 0.46 -0.1
408,328 + B158DRAFT_0402 0.46 +0.1
408,328 + B158DRAFT_0402 0.46 -0.3
408,336 - B158DRAFT_0402 0.47 -0.5
408,336 - B158DRAFT_0402 0.47 -0.1
408,336 - B158DRAFT_0402 0.47 -0.1
408,338 + B158DRAFT_0402 0.47 -0.1
408,338 + B158DRAFT_0402 0.47 -0.8
408,346 - B158DRAFT_0402 0.48 -0.5
408,381 - B158DRAFT_0402 0.52 -0.5
408,399 + B158DRAFT_0402 0.55 -0.0
408,404 + B158DRAFT_0402 0.55 -0.7
408,407 - B158DRAFT_0402 0.56 -2.1
408,414 + B158DRAFT_0402 0.56 +0.1
408,422 - B158DRAFT_0402 0.57 +0.6
408,448 - B158DRAFT_0402 0.60 -0.3
408,530 + B158DRAFT_0402 0.70 +0.2
408,537 + B158DRAFT_0402 0.71 -0.2
408,583 + B158DRAFT_0402 0.76 +0.3
408,589 + B158DRAFT_0402 0.77 -0.2
408,591 - B158DRAFT_0402 0.77 +0.4
408,597 - B158DRAFT_0402 0.78 -0.0
408,611 + B158DRAFT_0402 0.80 -1.1
408,611 + B158DRAFT_0402 0.80 +0.2
408,619 - B158DRAFT_0402 0.81 +0.2
408,619 - B158DRAFT_0402 0.81 -0.3
408,619 - B158DRAFT_0402 0.81 -0.1

Or see this region's nucleotide sequence