Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF759

Experiment: LB_plus_SM_buffer with 6F2_phage 0.1875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF758 and GFF759 are separated by 87 nucleotidesGFF759 and GFF760 are separated by 9 nucleotidesGFF760 and GFF761 overlap by 4 nucleotides GFF758 - Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2), at 115,446 to 116,561 GFF758 GFF759 - Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2), at 116,649 to 117,782 GFF759 GFF760 - Putrescine transport system permease protein PotH (TC 3.A.1.11.2), at 117,792 to 118,745 GFF760 GFF761 - Putrescine transport system permease protein PotI (TC 3.A.1.11.2), at 118,742 to 119,587 GFF761 Position (kb) 116 117 118Strain fitness (log2 ratio) -2 -1 0 1 2at 115.664 kb on - strand, within GFF758at 115.833 kb on + strand, within GFF758at 115.833 kb on + strand, within GFF758at 115.833 kb on + strand, within GFF758at 115.846 kb on - strand, within GFF758at 115.847 kb on + strand, within GFF758at 115.848 kb on - strand, within GFF758at 115.874 kb on + strand, within GFF758at 115.875 kb on - strand, within GFF758at 116.099 kb on - strand, within GFF758at 116.134 kb on - strand, within GFF758at 116.337 kb on - strand, within GFF758at 116.337 kb on - strand, within GFF758at 116.389 kb on - strand, within GFF758at 116.556 kb on - strandat 116.564 kb on + strandat 116.565 kb on - strandat 116.583 kb on + strandat 116.771 kb on + strand, within GFF759at 116.775 kb on + strand, within GFF759at 116.775 kb on + strand, within GFF759at 116.776 kb on - strand, within GFF759at 116.776 kb on - strand, within GFF759at 116.930 kb on + strand, within GFF759at 116.930 kb on + strand, within GFF759at 117.084 kb on - strand, within GFF759at 117.152 kb on + strand, within GFF759at 117.152 kb on + strand, within GFF759at 117.528 kb on + strand, within GFF759at 117.528 kb on + strand, within GFF759at 117.528 kb on + strand, within GFF759at 117.529 kb on - strand, within GFF759at 117.538 kb on + strand, within GFF759at 117.615 kb on - strand, within GFF759at 117.621 kb on + strand, within GFF759at 117.638 kb on + strand, within GFF759at 117.643 kb on - strand, within GFF759at 117.778 kb on + strandat 117.778 kb on + strandat 117.780 kb on + strandat 117.901 kb on - strand, within GFF760at 118.235 kb on - strand, within GFF760at 118.354 kb on - strand, within GFF760at 118.355 kb on + strand, within GFF760at 118.369 kb on - strand, within GFF760at 118.391 kb on - strand, within GFF760at 118.401 kb on + strand, within GFF760at 118.593 kb on - strand, within GFF760at 118.668 kb on - strandat 118.670 kb on + strandat 118.670 kb on + strandat 118.671 kb on - strandat 118.671 kb on - strandat 118.687 kb on + strandat 118.688 kb on - strandat 118.710 kb on - strandat 118.747 kb on + strandat 118.748 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 0.1875 MOI
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115,664 - GFF758 0.20 -0.8
115,833 + GFF758 0.35 -0.0
115,833 + GFF758 0.35 +0.3
115,833 + GFF758 0.35 +1.2
115,846 - GFF758 0.36 +0.3
115,847 + GFF758 0.36 -0.1
115,848 - GFF758 0.36 +0.9
115,874 + GFF758 0.38 -0.1
115,875 - GFF758 0.38 -0.7
116,099 - GFF758 0.59 -0.2
116,134 - GFF758 0.62 -0.3
116,337 - GFF758 0.80 -0.3
116,337 - GFF758 0.80 +0.4
116,389 - GFF758 0.84 -0.5
116,556 - -0.0
116,564 + -0.8
116,565 - -0.4
116,583 + -0.8
116,771 + GFF759 0.11 +1.0
116,775 + GFF759 0.11 -0.5
116,775 + GFF759 0.11 -0.4
116,776 - GFF759 0.11 +0.4
116,776 - GFF759 0.11 +1.0
116,930 + GFF759 0.25 -0.1
116,930 + GFF759 0.25 -0.2
117,084 - GFF759 0.38 +0.1
117,152 + GFF759 0.44 -0.5
117,152 + GFF759 0.44 -0.2
117,528 + GFF759 0.78 -2.1
117,528 + GFF759 0.78 -0.3
117,528 + GFF759 0.78 +0.7
117,529 - GFF759 0.78 -0.3
117,538 + GFF759 0.78 -0.0
117,615 - GFF759 0.85 -0.2
117,621 + GFF759 0.86 +0.4
117,638 + GFF759 0.87 -0.7
117,643 - GFF759 0.88 -0.1
117,778 + -0.1
117,778 + -0.3
117,780 + -0.8
117,901 - GFF760 0.11 -0.1
118,235 - GFF760 0.46 -0.2
118,354 - GFF760 0.59 +1.4
118,355 + GFF760 0.59 +1.1
118,369 - GFF760 0.60 -0.4
118,391 - GFF760 0.63 -1.7
118,401 + GFF760 0.64 +1.8
118,593 - GFF760 0.84 +0.2
118,668 - +2.4
118,670 + -0.2
118,670 + -0.5
118,671 - -1.0
118,671 - -0.0
118,687 + -0.6
118,688 - +0.2
118,710 - +2.0
118,747 + -0.6
118,748 - -0.7

Or see this region's nucleotide sequence