Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF537

Experiment: LB_plus_SM_buffer with 6F2_phage 0.1875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF536 and GFF537 are separated by 80 nucleotidesGFF537 and GFF538 are separated by 141 nucleotidesGFF538 and GFF539 are separated by 21 nucleotidesGFF539 and GFF540 overlap by 11 nucleotides GFF536 - Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4), at 268,436 to 270,634 GFF536 GFF537 - probable enzyme yhhN, at 270,715 to 271,341 GFF537 GFF538 - Putative receptor, at 271,483 to 271,854 GFF538 GFF539 - Putative inner membrane protein, at 271,876 to 272,145 GFF539 GFF540 - 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171), at 272,135 to 272,731 GFF540 Position (kb) 270 271 272Strain fitness (log2 ratio) -2 -1 0 1 2 3at 269.761 kb on + strand, within GFF536at 269.815 kb on + strand, within GFF536at 269.858 kb on - strand, within GFF536at 269.878 kb on + strand, within GFF536at 269.878 kb on + strand, within GFF536at 269.933 kb on - strand, within GFF536at 270.018 kb on - strand, within GFF536at 270.046 kb on + strand, within GFF536at 270.141 kb on + strand, within GFF536at 270.167 kb on - strand, within GFF536at 270.193 kb on + strand, within GFF536at 270.194 kb on - strand, within GFF536at 270.226 kb on + strand, within GFF536at 270.238 kb on + strand, within GFF536at 270.239 kb on - strand, within GFF536at 270.239 kb on - strand, within GFF536at 270.242 kb on - strand, within GFF536at 270.242 kb on - strand, within GFF536at 270.485 kb on - strandat 270.487 kb on - strandat 270.554 kb on - strandat 270.566 kb on + strandat 270.634 kb on + strandat 270.635 kb on - strandat 270.635 kb on - strandat 270.635 kb on - strandat 270.712 kb on + strandat 270.716 kb on + strandat 270.722 kb on + strandat 270.826 kb on - strand, within GFF537at 270.942 kb on + strand, within GFF537at 270.943 kb on - strand, within GFF537at 270.947 kb on - strand, within GFF537at 270.958 kb on + strand, within GFF537at 270.959 kb on - strand, within GFF537at 271.074 kb on - strand, within GFF537at 271.109 kb on + strand, within GFF537at 271.110 kb on - strand, within GFF537at 271.234 kb on + strand, within GFF537at 271.235 kb on - strand, within GFF537at 271.235 kb on - strand, within GFF537at 271.252 kb on - strand, within GFF537at 271.284 kb on - strandat 271.298 kb on + strandat 271.298 kb on + strandat 271.298 kb on + strandat 271.378 kb on + strandat 271.404 kb on + strandat 271.434 kb on - strandat 271.434 kb on - strandat 271.434 kb on - strandat 271.435 kb on + strandat 271.436 kb on - strandat 271.595 kb on + strand, within GFF538at 271.641 kb on + strand, within GFF538at 271.689 kb on + strand, within GFF538at 271.696 kb on + strand, within GFF538at 271.802 kb on - strand, within GFF538at 271.853 kb on - strandat 272.010 kb on + strand, within GFF539at 272.056 kb on - strand, within GFF539at 272.088 kb on + strand, within GFF539at 272.089 kb on - strand, within GFF539at 272.173 kb on - strandat 272.264 kb on + strand, within GFF540at 272.265 kb on - strand, within GFF540at 272.269 kb on - strand, within GFF540at 272.269 kb on - strand, within GFF540at 272.315 kb on + strand, within GFF540

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 0.1875 MOI
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269,761 + GFF536 0.60 +0.1
269,815 + GFF536 0.63 -0.3
269,858 - GFF536 0.65 -0.5
269,878 + GFF536 0.66 -0.2
269,878 + GFF536 0.66 +1.0
269,933 - GFF536 0.68 -1.9
270,018 - GFF536 0.72 -0.6
270,046 + GFF536 0.73 -0.5
270,141 + GFF536 0.78 +0.0
270,167 - GFF536 0.79 +0.5
270,193 + GFF536 0.80 +0.9
270,194 - GFF536 0.80 +2.2
270,226 + GFF536 0.81 -0.7
270,238 + GFF536 0.82 +0.5
270,239 - GFF536 0.82 +1.3
270,239 - GFF536 0.82 +1.0
270,242 - GFF536 0.82 -0.3
270,242 - GFF536 0.82 -0.3
270,485 - +0.7
270,487 - +1.3
270,554 - +0.7
270,566 + +0.2
270,634 + +0.3
270,635 - -1.2
270,635 - -0.2
270,635 - -0.7
270,712 + +1.4
270,716 + -0.2
270,722 + +0.1
270,826 - GFF537 0.18 -1.1
270,942 + GFF537 0.36 -0.3
270,943 - GFF537 0.36 +0.4
270,947 - GFF537 0.37 +0.6
270,958 + GFF537 0.39 +0.4
270,959 - GFF537 0.39 -1.1
271,074 - GFF537 0.57 +0.1
271,109 + GFF537 0.63 +0.8
271,110 - GFF537 0.63 +3.3
271,234 + GFF537 0.83 +1.6
271,235 - GFF537 0.83 -1.4
271,235 - GFF537 0.83 -1.2
271,252 - GFF537 0.86 +0.3
271,284 - +0.5
271,298 + -1.1
271,298 + -0.5
271,298 + -0.4
271,378 + +2.0
271,404 + -0.1
271,434 - -0.1
271,434 - +0.7
271,434 - -0.7
271,435 + -0.1
271,436 - +1.2
271,595 + GFF538 0.30 +0.1
271,641 + GFF538 0.42 -0.6
271,689 + GFF538 0.55 -0.6
271,696 + GFF538 0.57 +0.6
271,802 - GFF538 0.86 +1.2
271,853 - +0.3
272,010 + GFF539 0.50 -2.0
272,056 - GFF539 0.67 -0.7
272,088 + GFF539 0.79 -1.0
272,089 - GFF539 0.79 +0.3
272,173 - +0.5
272,264 + GFF540 0.22 +0.9
272,265 - GFF540 0.22 +0.6
272,269 - GFF540 0.22 +0.6
272,269 - GFF540 0.22 -0.6
272,315 + GFF540 0.30 -0.9

Or see this region's nucleotide sequence