Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4801

Experiment: LB_plus_SM_buffer with 6F2_phage 0.1875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4800 and GFF4801 are separated by 250 nucleotidesGFF4801 and GFF4802 are separated by 1 nucleotidesGFF4802 and GFF4803 are separated by 190 nucleotidesGFF4803 and GFF4804 are separated by 69 nucleotidesGFF4804 and GFF4805 overlap by 10 nucleotidesGFF4805 and GFF4806 are separated by 63 nucleotides GFF4800 - Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4), at 104,174 to 105,082 GFF4800 GFF4801 - Alkaline phosphatase isozyme conversion protein precursor (EC 3.4.11.-), at 105,333 to 106,379 GFF4801 GFF4802 - FIG01045727: hypothetical protein, at 106,381 to 106,554 GFF4802 GFF4803 - hypothetical protein, at 106,745 to 106,891 GFF4803 GFF4804 - hypothetical protein, at 106,961 to 107,092 GFF4804 GFF4805 - FIG01046225: hypothetical protein, at 107,083 to 107,202 GFF4805 GFF4806 - FIG01045727: hypothetical protein, at 107,266 to 107,457 GFF4806 Position (kb) 105 106 107Strain fitness (log2 ratio) -1 0 1 2 3at 104.494 kb on - strand, within GFF4800at 104.572 kb on - strand, within GFF4800at 104.727 kb on - strand, within GFF4800at 104.812 kb on + strand, within GFF4800at 104.813 kb on - strand, within GFF4800at 104.816 kb on + strand, within GFF4800at 104.865 kb on + strand, within GFF4800at 104.865 kb on + strand, within GFF4800at 104.865 kb on + strand, within GFF4800at 104.904 kb on - strand, within GFF4800at 104.982 kb on + strand, within GFF4800at 104.983 kb on - strand, within GFF4800at 105.025 kb on + strandat 105.083 kb on - strandat 105.125 kb on + strandat 105.136 kb on - strandat 105.178 kb on + strandat 105.317 kb on + strandat 105.321 kb on + strandat 105.434 kb on + strandat 105.563 kb on + strand, within GFF4801at 105.575 kb on + strand, within GFF4801at 105.581 kb on + strand, within GFF4801at 105.582 kb on - strand, within GFF4801at 105.689 kb on + strand, within GFF4801at 105.694 kb on - strand, within GFF4801at 105.762 kb on - strand, within GFF4801at 105.814 kb on + strand, within GFF4801at 105.872 kb on - strand, within GFF4801at 105.872 kb on - strand, within GFF4801at 105.974 kb on + strand, within GFF4801at 106.253 kb on - strand, within GFF4801at 106.321 kb on + strandat 106.322 kb on - strandat 106.322 kb on - strandat 106.322 kb on - strandat 106.322 kb on - strandat 106.381 kb on - strandat 106.399 kb on + strand, within GFF4802at 106.555 kb on + strandat 106.555 kb on + strandat 106.555 kb on + strandat 106.675 kb on + strandat 106.675 kb on + strandat 106.677 kb on + strandat 106.678 kb on - strandat 107.157 kb on - strand, within GFF4805at 107.163 kb on - strand, within GFF4805at 107.212 kb on + strandat 107.212 kb on + strandat 107.213 kb on - strandat 107.324 kb on + strand, within GFF4806

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 0.1875 MOI
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104,494 - GFF4800 0.35 +0.4
104,572 - GFF4800 0.44 +0.1
104,727 - GFF4800 0.61 +0.2
104,812 + GFF4800 0.70 +0.6
104,813 - GFF4800 0.70 -0.1
104,816 + GFF4800 0.71 -0.2
104,865 + GFF4800 0.76 +0.3
104,865 + GFF4800 0.76 +3.5
104,865 + GFF4800 0.76 -0.5
104,904 - GFF4800 0.80 -0.6
104,982 + GFF4800 0.89 -0.7
104,983 - GFF4800 0.89 +0.1
105,025 + -0.2
105,083 - +2.9
105,125 + +0.2
105,136 - -0.1
105,178 + +0.4
105,317 + -0.1
105,321 + -0.5
105,434 + -0.7
105,563 + GFF4801 0.22 -0.4
105,575 + GFF4801 0.23 +0.1
105,581 + GFF4801 0.24 +0.1
105,582 - GFF4801 0.24 -0.7
105,689 + GFF4801 0.34 -0.4
105,694 - GFF4801 0.34 +1.1
105,762 - GFF4801 0.41 +0.7
105,814 + GFF4801 0.46 +2.2
105,872 - GFF4801 0.51 +0.8
105,872 - GFF4801 0.51 +0.5
105,974 + GFF4801 0.61 +0.6
106,253 - GFF4801 0.88 +2.6
106,321 + -1.1
106,322 - +0.2
106,322 - +2.8
106,322 - +0.8
106,322 - -0.3
106,381 - -0.6
106,399 + GFF4802 0.10 +0.7
106,555 + -0.9
106,555 + -0.2
106,555 + +1.2
106,675 + -0.6
106,675 + -0.9
106,677 + +1.1
106,678 - +0.8
107,157 - GFF4805 0.62 -0.4
107,163 - GFF4805 0.67 +1.6
107,212 + -0.6
107,212 + +0.0
107,213 - +1.5
107,324 + GFF4806 0.30 -0.4

Or see this region's nucleotide sequence