Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3787

Experiment: LB_plus_SM_buffer with 6F2_phage 0.1875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3786 and GFF3787 are separated by 149 nucleotidesGFF3787 and GFF3788 are separated by 498 nucleotides GFF3786 - FIG00924762: possible membrane protein, at 54,423 to 55,565 GFF3786 GFF3787 - Mgl repressor and galactose ultrainduction factor GalS, HTH-type transcriptional regulator, at 55,715 to 56,737 GFF3787 GFF3788 - Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3), at 57,236 to 58,234 GFF3788 Position (kb) 55 56 57Strain fitness (log2 ratio) -1 0 1 2 3at 54.722 kb on - strand, within GFF3786at 54.722 kb on - strand, within GFF3786at 55.174 kb on + strand, within GFF3786at 55.174 kb on + strand, within GFF3786at 56.482 kb on - strand, within GFF3787at 56.554 kb on + strand, within GFF3787at 56.554 kb on + strand, within GFF3787at 56.804 kb on + strandat 56.805 kb on - strandat 56.847 kb on + strandat 56.879 kb on + strandat 57.217 kb on + strandat 57.221 kb on - strandat 57.249 kb on + strandat 57.311 kb on - strandat 57.334 kb on + strandat 57.339 kb on - strand, within GFF3788at 57.339 kb on - strand, within GFF3788at 57.352 kb on + strand, within GFF3788at 57.374 kb on - strand, within GFF3788at 57.411 kb on + strand, within GFF3788at 57.411 kb on + strand, within GFF3788at 57.624 kb on - strand, within GFF3788at 57.624 kb on - strand, within GFF3788at 57.712 kb on + strand, within GFF3788at 57.712 kb on + strand, within GFF3788

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 0.1875 MOI
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54,722 - GFF3786 0.26 +0.7
54,722 - GFF3786 0.26 -0.3
55,174 + GFF3786 0.66 -0.3
55,174 + GFF3786 0.66 +0.5
56,482 - GFF3787 0.75 +0.3
56,554 + GFF3787 0.82 -0.5
56,554 + GFF3787 0.82 -1.1
56,804 + +0.4
56,805 - +0.1
56,847 + +0.7
56,879 + +0.3
57,217 + +1.0
57,221 - +0.1
57,249 + +0.0
57,311 - -0.3
57,334 + +0.9
57,339 - GFF3788 0.10 -0.3
57,339 - GFF3788 0.10 -0.1
57,352 + GFF3788 0.12 +0.7
57,374 - GFF3788 0.14 +0.6
57,411 + GFF3788 0.18 +1.2
57,411 + GFF3788 0.18 +0.3
57,624 - GFF3788 0.39 +0.8
57,624 - GFF3788 0.39 +0.1
57,712 + GFF3788 0.48 -0.2
57,712 + GFF3788 0.48 +2.9

Or see this region's nucleotide sequence