Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3077

Experiment: LB_plus_SM_buffer with 6F2_phage 0.1875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3076 and GFF3077 are separated by 47 nucleotidesGFF3077 and GFF3078 are separated by 68 nucleotides GFF3076 - LysR family transcriptional regulator STM3121, at 84,795 to 85,673 GFF3076 GFF3077 - Arylsulfatase (EC 3.1.6.1), at 85,721 to 87,460 GFF3077 GFF3078 - Putative arylsulfatase regulator, at 87,529 to 88,713 GFF3078 Position (kb) 85 86 87 88Strain fitness (log2 ratio) -1 0 1 2 3 4at 84.757 kb on + strandat 84.758 kb on - strandat 84.874 kb on + strandat 84.874 kb on + strandat 84.875 kb on - strandat 84.902 kb on + strand, within GFF3076at 84.999 kb on - strand, within GFF3076at 85.086 kb on - strand, within GFF3076at 85.181 kb on + strand, within GFF3076at 85.298 kb on + strand, within GFF3076at 85.299 kb on - strand, within GFF3076at 85.562 kb on - strand, within GFF3076at 85.565 kb on - strand, within GFF3076at 85.697 kb on - strandat 85.719 kb on - strandat 85.830 kb on + strandat 85.830 kb on + strandat 86.004 kb on - strand, within GFF3077at 86.057 kb on - strand, within GFF3077at 86.074 kb on - strand, within GFF3077at 86.238 kb on - strand, within GFF3077at 86.258 kb on - strand, within GFF3077at 86.288 kb on - strand, within GFF3077at 86.372 kb on - strand, within GFF3077at 86.480 kb on + strand, within GFF3077at 86.481 kb on - strand, within GFF3077at 86.570 kb on - strand, within GFF3077at 86.570 kb on - strand, within GFF3077at 86.602 kb on - strand, within GFF3077at 86.739 kb on + strand, within GFF3077at 86.821 kb on + strand, within GFF3077at 86.927 kb on - strand, within GFF3077at 86.927 kb on - strand, within GFF3077at 86.928 kb on + strand, within GFF3077at 86.928 kb on + strand, within GFF3077at 86.929 kb on - strand, within GFF3077at 86.931 kb on + strand, within GFF3077at 86.931 kb on + strand, within GFF3077at 86.931 kb on + strand, within GFF3077at 86.931 kb on + strand, within GFF3077at 86.932 kb on - strand, within GFF3077at 86.932 kb on - strand, within GFF3077at 86.935 kb on + strand, within GFF3077at 86.943 kb on - strand, within GFF3077at 87.100 kb on + strand, within GFF3077at 87.101 kb on - strand, within GFF3077at 87.162 kb on - strand, within GFF3077at 87.261 kb on + strand, within GFF3077at 87.379 kb on + strandat 87.379 kb on + strandat 87.447 kb on - strandat 87.466 kb on - strandat 87.482 kb on + strandat 87.643 kb on - strandat 87.673 kb on - strand, within GFF3078at 87.673 kb on - strand, within GFF3078at 87.701 kb on - strand, within GFF3078at 87.745 kb on - strand, within GFF3078at 87.792 kb on + strand, within GFF3078at 87.799 kb on - strand, within GFF3078at 87.816 kb on - strand, within GFF3078at 87.828 kb on + strand, within GFF3078at 87.829 kb on - strand, within GFF3078at 88.005 kb on + strand, within GFF3078at 88.175 kb on - strand, within GFF3078at 88.202 kb on - strand, within GFF3078at 88.421 kb on - strand, within GFF3078at 88.424 kb on - strand, within GFF3078

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 0.1875 MOI
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84,757 + -0.3
84,758 - +0.0
84,874 + -0.1
84,874 + +0.4
84,875 - -0.8
84,902 + GFF3076 0.12 +0.5
84,999 - GFF3076 0.23 +4.5
85,086 - GFF3076 0.33 -0.2
85,181 + GFF3076 0.44 -0.1
85,298 + GFF3076 0.57 +0.5
85,299 - GFF3076 0.57 +0.1
85,562 - GFF3076 0.87 -0.4
85,565 - GFF3076 0.88 -0.7
85,697 - +1.4
85,719 - +0.2
85,830 + +1.6
85,830 + -1.2
86,004 - GFF3077 0.16 +0.3
86,057 - GFF3077 0.19 +1.6
86,074 - GFF3077 0.20 -0.5
86,238 - GFF3077 0.30 +0.5
86,258 - GFF3077 0.31 -0.3
86,288 - GFF3077 0.33 +0.0
86,372 - GFF3077 0.37 +0.1
86,480 + GFF3077 0.44 +0.1
86,481 - GFF3077 0.44 +3.5
86,570 - GFF3077 0.49 -1.2
86,570 - GFF3077 0.49 +0.5
86,602 - GFF3077 0.51 +0.2
86,739 + GFF3077 0.59 +1.1
86,821 + GFF3077 0.63 -0.3
86,927 - GFF3077 0.69 +0.2
86,927 - GFF3077 0.69 -0.2
86,928 + GFF3077 0.69 +1.4
86,928 + GFF3077 0.69 +0.2
86,929 - GFF3077 0.69 +0.8
86,931 + GFF3077 0.70 -0.5
86,931 + GFF3077 0.70 +1.4
86,931 + GFF3077 0.70 +0.6
86,931 + GFF3077 0.70 -0.8
86,932 - GFF3077 0.70 -0.0
86,932 - GFF3077 0.70 +0.2
86,935 + GFF3077 0.70 +0.1
86,943 - GFF3077 0.70 +1.3
87,100 + GFF3077 0.79 +0.2
87,101 - GFF3077 0.79 -0.1
87,162 - GFF3077 0.83 +0.2
87,261 + GFF3077 0.89 -0.9
87,379 + -0.2
87,379 + +0.6
87,447 - +1.6
87,466 - -0.4
87,482 + +0.0
87,643 - +0.0
87,673 - GFF3078 0.12 -0.7
87,673 - GFF3078 0.12 +0.1
87,701 - GFF3078 0.15 -0.2
87,745 - GFF3078 0.18 -1.2
87,792 + GFF3078 0.22 +0.2
87,799 - GFF3078 0.23 -0.0
87,816 - GFF3078 0.24 -0.7
87,828 + GFF3078 0.25 -0.6
87,829 - GFF3078 0.25 +0.6
88,005 + GFF3078 0.40 -0.5
88,175 - GFF3078 0.55 -0.4
88,202 - GFF3078 0.57 +2.2
88,421 - GFF3078 0.75 -0.7
88,424 - GFF3078 0.76 +0.7

Or see this region's nucleotide sequence