Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF298

Experiment: LB_plus_SM_buffer with 6F2_phage 0.1875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF298 and GFF299 are separated by 3 nucleotidesGFF299 and GFF300 are separated by 1 nucleotides GFF298 - Acetolactate synthase large subunit (EC 2.2.1.6), at 15,473 to 17,161 GFF298 GFF299 - Acetolactate synthase small subunit (EC 2.2.1.6), at 17,165 to 17,455 GFF299 GFF300 - Deoxyribose operon repressor, DeoR family, at 17,457 to 18,242 GFF300 Position (kb) 15 16 17 18Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 14.674 kb on - strandat 14.746 kb on - strandat 14.864 kb on - strandat 14.864 kb on - strandat 15.026 kb on + strandat 15.134 kb on + strandat 15.231 kb on + strandat 15.234 kb on - strandat 15.299 kb on + strandat 15.300 kb on - strandat 15.427 kb on + strandat 15.459 kb on - strandat 15.599 kb on + strandat 15.610 kb on - strandat 15.620 kb on - strandat 15.634 kb on + strandat 15.668 kb on - strand, within GFF298at 15.712 kb on + strand, within GFF298at 15.722 kb on - strand, within GFF298at 15.855 kb on - strand, within GFF298at 16.462 kb on - strand, within GFF298at 16.644 kb on + strand, within GFF298at 16.823 kb on - strand, within GFF298at 16.903 kb on - strand, within GFF298at 16.925 kb on + strand, within GFF298at 16.928 kb on - strand, within GFF298at 17.050 kb on + strandat 17.458 kb on + strandat 17.458 kb on + strandat 17.519 kb on - strandat 17.543 kb on + strand, within GFF300at 17.724 kb on - strand, within GFF300at 17.776 kb on + strand, within GFF300at 17.832 kb on - strand, within GFF300at 18.035 kb on + strand, within GFF300at 18.056 kb on + strand, within GFF300at 18.071 kb on + strand, within GFF300

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 0.1875 MOI
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14,674 - +1.6
14,746 - -0.3
14,864 - +1.4
14,864 - +1.3
15,026 + +0.3
15,134 + +1.7
15,231 + -0.9
15,234 - +4.1
15,299 + +1.1
15,300 - +1.4
15,427 + +1.0
15,459 - -0.3
15,599 + +2.4
15,610 - -1.2
15,620 - +0.1
15,634 + +0.3
15,668 - GFF298 0.12 +2.1
15,712 + GFF298 0.14 -0.6
15,722 - GFF298 0.15 +0.0
15,855 - GFF298 0.23 +0.7
16,462 - GFF298 0.59 +2.2
16,644 + GFF298 0.69 -0.2
16,823 - GFF298 0.80 -0.1
16,903 - GFF298 0.85 +0.3
16,925 + GFF298 0.86 -0.7
16,928 - GFF298 0.86 +1.2
17,050 + +0.2
17,458 + -0.5
17,458 + -1.1
17,519 - -1.9
17,543 + GFF300 0.11 -0.7
17,724 - GFF300 0.34 +0.3
17,776 + GFF300 0.41 +0.5
17,832 - GFF300 0.48 -0.9
18,035 + GFF300 0.74 -0.8
18,056 + GFF300 0.76 -0.5
18,071 + GFF300 0.78 +1.1

Or see this region's nucleotide sequence