Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2444

Experiment: LB_plus_SM_buffer with 6F2_phage 0.1875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2442 and GFF2443 are separated by 0 nucleotidesGFF2443 and GFF2444 overlap by 10 nucleotidesGFF2444 and GFF2445 are separated by 95 nucleotides GFF2442 - Anaerobic sulfite reductase subunit C (EC 1.8.1.-), at 56,804 to 57,817 GFF2442 GFF2443 - putative membrane protein, at 57,818 to 58,804 GFF2443 GFF2444 - FIG00923183: possible membrane protein YebY, at 58,795 to 59,463 GFF2444 GFF2445 - Stationary phase inducible protein CsiE, at 59,559 to 60,836 GFF2445 Position (kb) 58 59 60Strain fitness (log2 ratio) -2 -1 0 1 2 3at 57.942 kb on - strand, within GFF2443at 58.015 kb on + strand, within GFF2443at 58.249 kb on + strand, within GFF2443at 58.270 kb on + strand, within GFF2443at 58.270 kb on + strand, within GFF2443at 58.275 kb on - strand, within GFF2443at 58.342 kb on - strand, within GFF2443at 58.401 kb on - strand, within GFF2443at 58.739 kb on + strandat 58.833 kb on + strandat 58.918 kb on - strand, within GFF2444at 58.919 kb on + strand, within GFF2444at 58.920 kb on - strand, within GFF2444at 58.982 kb on + strand, within GFF2444at 58.998 kb on - strand, within GFF2444at 59.000 kb on + strand, within GFF2444at 59.027 kb on + strand, within GFF2444at 59.027 kb on + strand, within GFF2444at 59.027 kb on + strand, within GFF2444at 59.028 kb on - strand, within GFF2444at 59.028 kb on - strand, within GFF2444at 59.166 kb on + strand, within GFF2444at 59.186 kb on - strand, within GFF2444at 59.221 kb on + strand, within GFF2444at 59.302 kb on + strand, within GFF2444at 59.482 kb on + strandat 59.676 kb on - strandat 59.694 kb on - strand, within GFF2445at 59.822 kb on - strand, within GFF2445at 59.848 kb on + strand, within GFF2445at 59.936 kb on + strand, within GFF2445at 60.031 kb on - strand, within GFF2445at 60.041 kb on - strand, within GFF2445at 60.189 kb on - strand, within GFF2445at 60.335 kb on + strand, within GFF2445at 60.348 kb on + strand, within GFF2445at 60.348 kb on + strand, within GFF2445at 60.349 kb on - strand, within GFF2445at 60.349 kb on - strand, within GFF2445at 60.383 kb on - strand, within GFF2445at 60.383 kb on - strand, within GFF2445at 60.405 kb on - strand, within GFF2445

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 0.1875 MOI
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57,942 - GFF2443 0.13 +0.6
58,015 + GFF2443 0.20 +0.6
58,249 + GFF2443 0.44 +3.7
58,270 + GFF2443 0.46 -0.2
58,270 + GFF2443 0.46 -0.7
58,275 - GFF2443 0.46 -0.3
58,342 - GFF2443 0.53 +0.2
58,401 - GFF2443 0.59 -0.2
58,739 + -0.6
58,833 + +0.5
58,918 - GFF2444 0.18 +1.8
58,919 + GFF2444 0.19 +0.4
58,920 - GFF2444 0.19 -0.2
58,982 + GFF2444 0.28 -0.1
58,998 - GFF2444 0.30 -1.3
59,000 + GFF2444 0.31 -0.8
59,027 + GFF2444 0.35 +1.2
59,027 + GFF2444 0.35 +0.1
59,027 + GFF2444 0.35 +0.7
59,028 - GFF2444 0.35 -0.6
59,028 - GFF2444 0.35 +0.6
59,166 + GFF2444 0.55 +2.3
59,186 - GFF2444 0.58 -0.9
59,221 + GFF2444 0.64 -0.0
59,302 + GFF2444 0.76 +1.7
59,482 + +0.1
59,676 - -0.7
59,694 - GFF2445 0.11 +2.8
59,822 - GFF2445 0.21 -0.5
59,848 + GFF2445 0.23 -1.4
59,936 + GFF2445 0.29 +1.1
60,031 - GFF2445 0.37 +0.2
60,041 - GFF2445 0.38 +1.2
60,189 - GFF2445 0.49 -1.0
60,335 + GFF2445 0.61 +0.1
60,348 + GFF2445 0.62 +1.1
60,348 + GFF2445 0.62 +0.2
60,349 - GFF2445 0.62 +0.4
60,349 - GFF2445 0.62 +0.5
60,383 - GFF2445 0.64 -0.3
60,383 - GFF2445 0.64 -1.8
60,405 - GFF2445 0.66 +0.4

Or see this region's nucleotide sequence