Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2183

Experiment: LB_plus_SM_buffer with 6F2_phage 0.1875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2182 and GFF2183 are separated by 130 nucleotidesGFF2183 and GFF2184 are separated by 15 nucleotides GFF2182 - Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6), at 28,567 to 29,280 GFF2182 GFF2183 - YpfJ protein, zinc metalloprotease superfamily, at 29,411 to 30,274 GFF2183 GFF2184 - Predicted P-loop ATPase fused to an acetyltransferase COG1444, at 30,290 to 32,308 GFF2184 Position (kb) 29 30 31Strain fitness (log2 ratio) -2 -1 0 1 2at 28.906 kb on - strand, within GFF2182at 28.965 kb on + strand, within GFF2182at 29.049 kb on - strand, within GFF2182at 29.116 kb on - strand, within GFF2182at 29.240 kb on - strandat 29.278 kb on + strandat 29.344 kb on + strandat 29.344 kb on + strandat 29.385 kb on + strandat 29.386 kb on - strandat 29.446 kb on - strandat 29.555 kb on + strand, within GFF2183at 29.558 kb on + strand, within GFF2183at 29.559 kb on - strand, within GFF2183at 29.559 kb on - strand, within GFF2183at 29.829 kb on - strand, within GFF2183at 29.829 kb on - strand, within GFF2183at 29.897 kb on + strand, within GFF2183at 29.898 kb on - strand, within GFF2183at 29.898 kb on - strand, within GFF2183at 29.898 kb on - strand, within GFF2183at 29.928 kb on + strand, within GFF2183at 30.021 kb on + strand, within GFF2183at 30.676 kb on + strand, within GFF2184at 31.134 kb on + strand, within GFF2184at 31.137 kb on + strand, within GFF2184

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 0.1875 MOI
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28,906 - GFF2182 0.47 +0.7
28,965 + GFF2182 0.56 -2.4
29,049 - GFF2182 0.68 -0.1
29,116 - GFF2182 0.77 +0.4
29,240 - +0.8
29,278 + -0.7
29,344 + -0.1
29,344 + -0.7
29,385 + +0.2
29,386 - +1.9
29,446 - -0.4
29,555 + GFF2183 0.17 +1.4
29,558 + GFF2183 0.17 -0.2
29,559 - GFF2183 0.17 -1.0
29,559 - GFF2183 0.17 +0.2
29,829 - GFF2183 0.48 -2.1
29,829 - GFF2183 0.48 +0.5
29,897 + GFF2183 0.56 +0.1
29,898 - GFF2183 0.56 -0.6
29,898 - GFF2183 0.56 +1.1
29,898 - GFF2183 0.56 -1.0
29,928 + GFF2183 0.60 +2.6
30,021 + GFF2183 0.71 +0.3
30,676 + GFF2184 0.19 -2.2
31,134 + GFF2184 0.42 -1.7
31,137 + GFF2184 0.42 -2.0

Or see this region's nucleotide sequence