Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1470

Experiment: LB_plus_SM_buffer with 6F2_phage 0.1875 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1468 and GFF1469 are separated by 0 nucleotidesGFF1469 and GFF1470 overlap by 4 nucleotidesGFF1470 and GFF1471 are separated by 133 nucleotides GFF1468 - Sensor protein basS/pmrB (EC 2.7.3.-), at 132,770 to 133,849 GFF1468 GFF1469 - Transcriptional regulatory protein basR/pmrA, at 133,850 to 134,518 GFF1469 GFF1470 - Phosphoethanolamine transferase EptA specific for the 1 phosphate group of core-lipid A, at 134,515 to 136,158 GFF1470 GFF1471 - Arginine/agmatine antiporter, at 136,292 to 137,560 GFF1471 Position (kb) 134 135 136 137Strain fitness (log2 ratio) -2 -1 0 1 2 3at 133.517 kb on - strand, within GFF1468at 133.615 kb on + strand, within GFF1468at 133.616 kb on - strand, within GFF1468at 133.669 kb on + strand, within GFF1468at 133.754 kb on - strandat 133.754 kb on - strandat 133.780 kb on + strandat 133.851 kb on + strandat 133.878 kb on + strandat 133.933 kb on + strand, within GFF1469at 133.933 kb on + strand, within GFF1469at 133.937 kb on + strand, within GFF1469at 133.937 kb on + strand, within GFF1469at 133.938 kb on - strand, within GFF1469at 133.938 kb on - strand, within GFF1469at 133.938 kb on - strand, within GFF1469at 133.939 kb on + strand, within GFF1469at 133.939 kb on + strand, within GFF1469at 133.940 kb on - strand, within GFF1469at 133.984 kb on - strand, within GFF1469at 133.984 kb on - strand, within GFF1469at 133.993 kb on + strand, within GFF1469at 133.994 kb on - strand, within GFF1469at 133.995 kb on + strand, within GFF1469at 134.056 kb on - strand, within GFF1469at 134.111 kb on + strand, within GFF1469at 134.112 kb on - strand, within GFF1469at 134.114 kb on - strand, within GFF1469at 134.114 kb on - strand, within GFF1469at 134.162 kb on - strand, within GFF1469at 134.307 kb on + strand, within GFF1469at 134.404 kb on + strand, within GFF1469at 134.469 kb on - strandat 134.483 kb on + strandat 134.484 kb on - strandat 134.567 kb on + strandat 134.568 kb on - strandat 134.579 kb on - strandat 134.673 kb on - strandat 134.805 kb on - strand, within GFF1470at 134.866 kb on + strand, within GFF1470at 134.868 kb on + strand, within GFF1470at 134.869 kb on - strand, within GFF1470at 134.871 kb on - strand, within GFF1470at 134.871 kb on - strand, within GFF1470at 134.871 kb on - strand, within GFF1470at 134.892 kb on + strand, within GFF1470at 134.897 kb on + strand, within GFF1470at 134.898 kb on - strand, within GFF1470at 134.990 kb on + strand, within GFF1470at 134.990 kb on + strand, within GFF1470at 134.990 kb on + strand, within GFF1470at 135.019 kb on - strand, within GFF1470at 135.019 kb on - strand, within GFF1470at 135.023 kb on - strand, within GFF1470at 135.057 kb on + strand, within GFF1470at 135.058 kb on - strand, within GFF1470at 135.059 kb on + strand, within GFF1470at 135.109 kb on - strand, within GFF1470at 135.128 kb on - strand, within GFF1470at 135.199 kb on + strand, within GFF1470at 135.225 kb on + strand, within GFF1470at 135.226 kb on - strand, within GFF1470at 135.266 kb on + strand, within GFF1470at 135.283 kb on - strand, within GFF1470at 135.348 kb on - strand, within GFF1470at 135.509 kb on - strand, within GFF1470at 135.542 kb on + strand, within GFF1470at 135.542 kb on + strand, within GFF1470at 135.564 kb on + strand, within GFF1470at 135.565 kb on - strand, within GFF1470at 135.624 kb on - strand, within GFF1470at 135.702 kb on + strand, within GFF1470at 135.706 kb on + strand, within GFF1470at 135.707 kb on - strand, within GFF1470at 135.970 kb on - strand, within GFF1470at 135.982 kb on - strand, within GFF1470at 136.033 kb on + strandat 136.040 kb on - strandat 136.040 kb on - strandat 136.049 kb on - strandat 136.052 kb on - strandat 136.052 kb on - strandat 136.061 kb on + strandat 136.061 kb on + strandat 136.089 kb on + strandat 136.090 kb on - strandat 136.091 kb on + strandat 136.092 kb on - strandat 136.153 kb on + strandat 136.154 kb on - strandat 136.219 kb on - strandat 136.227 kb on - strandat 136.279 kb on + strandat 136.279 kb on + strandat 136.280 kb on - strandat 136.280 kb on - strandat 136.280 kb on - strandat 136.280 kb on - strandat 136.280 kb on - strandat 136.280 kb on - strandat 136.284 kb on - strandat 136.324 kb on - strandat 136.347 kb on + strandat 136.348 kb on - strandat 136.359 kb on + strandat 136.360 kb on - strandat 136.441 kb on - strand, within GFF1471at 136.459 kb on + strand, within GFF1471at 136.511 kb on + strand, within GFF1471at 136.828 kb on + strand, within GFF1471at 136.915 kb on - strand, within GFF1471at 137.096 kb on - strand, within GFF1471

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 0.1875 MOI
remove
133,517 - GFF1468 0.69 +0.5
133,615 + GFF1468 0.78 -0.4
133,616 - GFF1468 0.78 +0.2
133,669 + GFF1468 0.83 +1.2
133,754 - -1.2
133,754 - +0.7
133,780 + -0.2
133,851 + -0.5
133,878 + -0.4
133,933 + GFF1469 0.12 +0.3
133,933 + GFF1469 0.12 +0.5
133,937 + GFF1469 0.13 -0.1
133,937 + GFF1469 0.13 -0.1
133,938 - GFF1469 0.13 +0.2
133,938 - GFF1469 0.13 +0.2
133,938 - GFF1469 0.13 +1.2
133,939 + GFF1469 0.13 -0.0
133,939 + GFF1469 0.13 +0.7
133,940 - GFF1469 0.13 +1.0
133,984 - GFF1469 0.20 +0.6
133,984 - GFF1469 0.20 +0.5
133,993 + GFF1469 0.21 +0.5
133,994 - GFF1469 0.22 -0.4
133,995 + GFF1469 0.22 -0.6
134,056 - GFF1469 0.31 -0.1
134,111 + GFF1469 0.39 +0.0
134,112 - GFF1469 0.39 -0.2
134,114 - GFF1469 0.39 +0.6
134,114 - GFF1469 0.39 -0.1
134,162 - GFF1469 0.47 -0.1
134,307 + GFF1469 0.68 +2.4
134,404 + GFF1469 0.83 +1.7
134,469 - -0.9
134,483 + +0.7
134,484 - +1.0
134,567 + +0.6
134,568 - +1.9
134,579 - -1.1
134,673 - -0.4
134,805 - GFF1470 0.18 +0.4
134,866 + GFF1470 0.21 +0.3
134,868 + GFF1470 0.21 +3.0
134,869 - GFF1470 0.22 -0.1
134,871 - GFF1470 0.22 -0.6
134,871 - GFF1470 0.22 +0.1
134,871 - GFF1470 0.22 -0.7
134,892 + GFF1470 0.23 +0.0
134,897 + GFF1470 0.23 +1.3
134,898 - GFF1470 0.23 +0.0
134,990 + GFF1470 0.29 -0.4
134,990 + GFF1470 0.29 -0.2
134,990 + GFF1470 0.29 +0.6
135,019 - GFF1470 0.31 -0.1
135,019 - GFF1470 0.31 -1.3
135,023 - GFF1470 0.31 -0.2
135,057 + GFF1470 0.33 +0.4
135,058 - GFF1470 0.33 -0.2
135,059 + GFF1470 0.33 +0.1
135,109 - GFF1470 0.36 +1.4
135,128 - GFF1470 0.37 -0.3
135,199 + GFF1470 0.42 -0.7
135,225 + GFF1470 0.43 -0.1
135,226 - GFF1470 0.43 -0.2
135,266 + GFF1470 0.46 +0.6
135,283 - GFF1470 0.47 +2.4
135,348 - GFF1470 0.51 +0.1
135,509 - GFF1470 0.60 +1.8
135,542 + GFF1470 0.62 +0.8
135,542 + GFF1470 0.62 -1.2
135,564 + GFF1470 0.64 +0.4
135,565 - GFF1470 0.64 -0.8
135,624 - GFF1470 0.67 -0.8
135,702 + GFF1470 0.72 -0.1
135,706 + GFF1470 0.72 +0.2
135,707 - GFF1470 0.73 +0.4
135,970 - GFF1470 0.89 +1.9
135,982 - GFF1470 0.89 -0.9
136,033 + -0.1
136,040 - -0.2
136,040 - +0.0
136,049 - +0.1
136,052 - +0.4
136,052 - +0.4
136,061 + -1.8
136,061 + +0.1
136,089 + -0.2
136,090 - +0.3
136,091 + +0.3
136,092 - +0.5
136,153 + -0.7
136,154 - -0.2
136,219 - -0.1
136,227 - +0.2
136,279 + -0.7
136,279 + +0.4
136,280 - -0.8
136,280 - -0.3
136,280 - -0.6
136,280 - -0.4
136,280 - -0.3
136,280 - +0.0
136,284 - +0.8
136,324 - -0.0
136,347 + +0.1
136,348 - +0.0
136,359 + -1.0
136,360 - -0.1
136,441 - GFF1471 0.12 -0.1
136,459 + GFF1471 0.13 +0.5
136,511 + GFF1471 0.17 +0.6
136,828 + GFF1471 0.42 -0.5
136,915 - GFF1471 0.49 +1.2
137,096 - GFF1471 0.63 +0.2

Or see this region's nucleotide sequence