Experiment: LB_plus_SM_buffer with 6F2_phage 0.1875 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1260 and GFF1261 overlap by 8 nucleotides GFF1261 and GFF1262 are separated by 48 nucleotides GFF1262 and GFF1263 are separated by 144 nucleotides GFF1263 and GFF1264 overlap by 1 nucleotides
GFF1260 - FIG074102: hypothetical protein, at 88,502 to 88,972
GFF1260
GFF1261 - FIG074102: hypothetical protein, at 88,965 to 89,321
GFF1261
GFF1262 - FIG01047494: hypothetical protein, at 89,370 to 89,558
GFF1262
GFF1263 - Adenine-specific methyltransferase (EC 2.1.1.72), at 89,703 to 90,383
GFF1263
GFF1264 - putative cytoplasmic protein, at 90,383 to 90,604
GFF1264
Position (kb) 89
90 Strain fitness (log2 ratio) -1
0
1
2 at 88.550 kb on + strand, within GFF1260 at 88.553 kb on - strand, within GFF1260 at 88.565 kb on + strand, within GFF1260 at 88.565 kb on + strand, within GFF1260 at 88.565 kb on + strand, within GFF1260 at 88.566 kb on - strand, within GFF1260 at 88.730 kb on - strand, within GFF1260 at 88.973 kb on + strand at 89.155 kb on - strand, within GFF1261 at 89.177 kb on + strand, within GFF1261 at 89.338 kb on - strand at 89.365 kb on + strand at 89.438 kb on + strand, within GFF1262 at 89.503 kb on - strand, within GFF1262 at 89.702 kb on + strand at 89.702 kb on + strand at 89.703 kb on - strand at 89.738 kb on + strand at 89.738 kb on + strand at 89.739 kb on - strand at 89.791 kb on - strand, within GFF1263 at 89.825 kb on + strand, within GFF1263 at 89.884 kb on + strand, within GFF1263 at 89.916 kb on + strand, within GFF1263 at 89.989 kb on + strand, within GFF1263 at 89.990 kb on - strand, within GFF1263 at 90.004 kb on - strand, within GFF1263 at 90.114 kb on + strand, within GFF1263 at 90.115 kb on - strand, within GFF1263 at 90.267 kb on - strand, within GFF1263
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 0.1875 MOI remove 88,550 + GFF1260 0.10 -0.2 88,553 - GFF1260 0.11 +0.7 88,565 + GFF1260 0.13 +0.2 88,565 + GFF1260 0.13 +0.4 88,565 + GFF1260 0.13 -1.1 88,566 - GFF1260 0.14 +1.3 88,730 - GFF1260 0.48 -0.1 88,973 + -0.7 89,155 - GFF1261 0.53 +0.9 89,177 + GFF1261 0.59 +1.2 89,338 - +2.0 89,365 + +0.4 89,438 + GFF1262 0.36 -1.1 89,503 - GFF1262 0.70 -0.4 89,702 + -0.3 89,702 + -0.8 89,703 - -0.6 89,738 + +2.0 89,738 + +0.3 89,739 - +0.3 89,791 - GFF1263 0.13 -1.2 89,825 + GFF1263 0.18 -0.3 89,884 + GFF1263 0.27 -0.8 89,916 + GFF1263 0.31 -0.7 89,989 + GFF1263 0.42 -0.3 89,990 - GFF1263 0.42 +0.7 90,004 - GFF1263 0.44 +0.3 90,114 + GFF1263 0.60 -0.2 90,115 - GFF1263 0.60 -0.0 90,267 - GFF1263 0.83 -0.6
Or see this region's nucleotide sequence