Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1245

Experiment: LB_plus_SM_buffer with 6F2_phage 0.1875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1243 and GFF1244 overlap by 11 nucleotidesGFF1244 and GFF1245 are separated by 36 nucleotidesGFF1245 and GFF1246 are separated by 421 nucleotides GFF1243 - COG3267: Type II secretory pathway, component ExeA (predicted ATPase), at 74,372 to 75,340 GFF1243 GFF1244 - Putative integrase protein, at 75,330 to 75,881 GFF1244 GFF1245 - FIG01046087: hypothetical protein, at 75,918 to 76,556 GFF1245 GFF1246 - RlgA, at 76,978 to 77,400 GFF1246 Position (kb) 75 76 77Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 74.923 kb on + strand, within GFF1243at 74.924 kb on - strand, within GFF1243at 74.926 kb on + strand, within GFF1243at 74.926 kb on + strand, within GFF1243at 75.061 kb on - strand, within GFF1243at 75.061 kb on - strand, within GFF1243at 75.184 kb on + strand, within GFF1243at 75.262 kb on + strandat 75.262 kb on + strandat 75.279 kb on + strandat 75.282 kb on + strandat 75.298 kb on + strandat 75.371 kb on - strandat 75.391 kb on - strand, within GFF1244at 75.422 kb on + strand, within GFF1244at 75.432 kb on - strand, within GFF1244at 75.659 kb on + strand, within GFF1244at 75.739 kb on + strand, within GFF1244at 75.772 kb on + strand, within GFF1244at 75.772 kb on + strand, within GFF1244at 75.772 kb on + strand, within GFF1244at 75.772 kb on + strand, within GFF1244at 75.772 kb on + strand, within GFF1244at 75.773 kb on - strand, within GFF1244at 75.773 kb on - strand, within GFF1244at 75.773 kb on - strand, within GFF1244at 75.773 kb on - strand, within GFF1244at 75.773 kb on - strand, within GFF1244at 75.773 kb on - strand, within GFF1244at 75.773 kb on - strand, within GFF1244at 75.773 kb on - strand, within GFF1244at 75.916 kb on + strandat 75.916 kb on + strandat 75.916 kb on + strandat 75.916 kb on + strandat 75.917 kb on - strandat 75.917 kb on - strandat 75.936 kb on - strandat 75.936 kb on - strandat 75.936 kb on - strandat 76.018 kb on + strand, within GFF1245at 76.031 kb on - strand, within GFF1245at 76.182 kb on - strand, within GFF1245at 76.227 kb on + strand, within GFF1245at 76.227 kb on + strand, within GFF1245at 76.227 kb on + strand, within GFF1245at 76.228 kb on - strand, within GFF1245at 76.262 kb on - strand, within GFF1245at 76.262 kb on - strand, within GFF1245at 76.360 kb on + strand, within GFF1245at 76.360 kb on + strand, within GFF1245at 76.361 kb on - strand, within GFF1245at 76.372 kb on + strand, within GFF1245at 76.408 kb on - strand, within GFF1245at 76.494 kb on - strandat 76.555 kb on - strandat 76.617 kb on + strandat 76.634 kb on + strandat 76.729 kb on - strandat 76.869 kb on - strandat 76.873 kb on + strandat 76.873 kb on + strandat 76.873 kb on + strandat 76.947 kb on + strandat 76.947 kb on + strandat 77.012 kb on + strandat 77.076 kb on + strand, within GFF1246at 77.078 kb on + strand, within GFF1246at 77.078 kb on + strand, within GFF1246at 77.079 kb on - strand, within GFF1246at 77.079 kb on - strand, within GFF1246at 77.087 kb on + strand, within GFF1246at 77.088 kb on - strand, within GFF1246at 77.090 kb on - strand, within GFF1246at 77.090 kb on - strand, within GFF1246at 77.090 kb on - strand, within GFF1246at 77.105 kb on - strand, within GFF1246at 77.105 kb on - strand, within GFF1246at 77.127 kb on - strand, within GFF1246at 77.128 kb on + strand, within GFF1246at 77.215 kb on - strand, within GFF1246at 77.300 kb on + strand, within GFF1246at 77.300 kb on + strand, within GFF1246at 77.300 kb on + strand, within GFF1246at 77.301 kb on - strand, within GFF1246at 77.301 kb on - strand, within GFF1246at 77.365 kb on - strandat 77.449 kb on - strandat 77.491 kb on - strandat 77.528 kb on + strandat 77.529 kb on - strandat 77.539 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 0.1875 MOI
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74,923 + GFF1243 0.57 -0.6
74,924 - GFF1243 0.57 +1.4
74,926 + GFF1243 0.57 -0.6
74,926 + GFF1243 0.57 +2.4
75,061 - GFF1243 0.71 -0.6
75,061 - GFF1243 0.71 -0.1
75,184 + GFF1243 0.84 +2.3
75,262 + -0.4
75,262 + +1.3
75,279 + +0.9
75,282 + -0.7
75,298 + +0.1
75,371 - -1.0
75,391 - GFF1244 0.11 +4.1
75,422 + GFF1244 0.17 -0.2
75,432 - GFF1244 0.18 -0.8
75,659 + GFF1244 0.60 -0.6
75,739 + GFF1244 0.74 -0.5
75,772 + GFF1244 0.80 +0.6
75,772 + GFF1244 0.80 +0.8
75,772 + GFF1244 0.80 -1.0
75,772 + GFF1244 0.80 -0.1
75,772 + GFF1244 0.80 +0.9
75,773 - GFF1244 0.80 +0.1
75,773 - GFF1244 0.80 +0.4
75,773 - GFF1244 0.80 -1.4
75,773 - GFF1244 0.80 -0.3
75,773 - GFF1244 0.80 +5.5
75,773 - GFF1244 0.80 +0.5
75,773 - GFF1244 0.80 +0.0
75,773 - GFF1244 0.80 +1.6
75,916 + +2.5
75,916 + -0.7
75,916 + -1.1
75,916 + -0.2
75,917 - +0.7
75,917 - -0.6
75,936 - -0.7
75,936 - -1.7
75,936 - -0.7
76,018 + GFF1245 0.16 -0.0
76,031 - GFF1245 0.18 -1.6
76,182 - GFF1245 0.41 -1.4
76,227 + GFF1245 0.48 -0.4
76,227 + GFF1245 0.48 -0.9
76,227 + GFF1245 0.48 -0.6
76,228 - GFF1245 0.49 -0.5
76,262 - GFF1245 0.54 -0.8
76,262 - GFF1245 0.54 -0.1
76,360 + GFF1245 0.69 +0.1
76,360 + GFF1245 0.69 -0.2
76,361 - GFF1245 0.69 -1.6
76,372 + GFF1245 0.71 -0.7
76,408 - GFF1245 0.77 -0.2
76,494 - -0.5
76,555 - +0.1
76,617 + -0.6
76,634 + -0.3
76,729 - +0.6
76,869 - -0.4
76,873 + +0.7
76,873 + -1.1
76,873 + -0.5
76,947 + +0.6
76,947 + +0.1
77,012 + +0.1
77,076 + GFF1246 0.23 -0.9
77,078 + GFF1246 0.24 +0.4
77,078 + GFF1246 0.24 -0.8
77,079 - GFF1246 0.24 +0.8
77,079 - GFF1246 0.24 -0.3
77,087 + GFF1246 0.26 +1.7
77,088 - GFF1246 0.26 +1.0
77,090 - GFF1246 0.26 +0.2
77,090 - GFF1246 0.26 -0.1
77,090 - GFF1246 0.26 -1.4
77,105 - GFF1246 0.30 -0.9
77,105 - GFF1246 0.30 +0.2
77,127 - GFF1246 0.35 -0.7
77,128 + GFF1246 0.35 +0.3
77,215 - GFF1246 0.56 -0.1
77,300 + GFF1246 0.76 +1.2
77,300 + GFF1246 0.76 +1.9
77,300 + GFF1246 0.76 -0.3
77,301 - GFF1246 0.76 -1.9
77,301 - GFF1246 0.76 +1.4
77,365 - +1.3
77,449 - +0.2
77,491 - +0.9
77,528 + -0.4
77,529 - +0.1
77,539 - +0.9

Or see this region's nucleotide sequence