Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28940 and ABID97_RS28945 are separated by 234 nucleotides ABID97_RS28945 and ABID97_RS28950 are separated by 10 nucleotides ABID97_RS28950 and ABID97_RS28955 are separated by 30 nucleotides ABID97_RS28955 and ABID97_RS28960 overlap by 8 nucleotides
ABID97_RS28940: ABID97_RS28940 - UBP-type zinc finger domain-containing protein, at 708,344 to 708,652
_RS28940
ABID97_RS28945: ABID97_RS28945 - tripartite tricarboxylate transporter TctB family protein, at 708,887 to 709,309
_RS28945
ABID97_RS28950: ABID97_RS28950 - tripartite tricarboxylate transporter permease, at 709,320 to 710,843
_RS28950
ABID97_RS28955: ABID97_RS28955 - MaoC family dehydratase, at 710,874 to 711,317
_RS28955
ABID97_RS28960: ABID97_RS28960 - AMP-binding protein, at 711,310 to 712,962
_RS28960
Position (kb) 709
710
711 Strain fitness (log2 ratio) -1
0
1
2 at 708.447 kb on + strand, within ABID97_RS28940 at 708.447 kb on + strand, within ABID97_RS28940 at 708.663 kb on + strand at 708.747 kb on + strand at 708.747 kb on + strand at 708.747 kb on + strand at 708.747 kb on + strand at 708.747 kb on + strand at 708.747 kb on + strand at 708.747 kb on + strand at 708.747 kb on + strand at 708.748 kb on - strand at 708.748 kb on - strand at 708.748 kb on - strand at 708.748 kb on - strand at 708.748 kb on - strand at 708.748 kb on - strand at 708.748 kb on - strand at 708.873 kb on + strand at 708.874 kb on - strand at 708.874 kb on - strand at 708.886 kb on + strand at 708.886 kb on + strand at 708.887 kb on - strand at 709.151 kb on + strand, within ABID97_RS28945 at 709.477 kb on - strand, within ABID97_RS28950 at 709.522 kb on - strand, within ABID97_RS28950 at 709.522 kb on - strand, within ABID97_RS28950 at 709.522 kb on - strand, within ABID97_RS28950 at 709.522 kb on - strand, within ABID97_RS28950 at 709.522 kb on - strand, within ABID97_RS28950 at 709.536 kb on + strand, within ABID97_RS28950 at 709.536 kb on + strand, within ABID97_RS28950 at 709.755 kb on + strand, within ABID97_RS28950 at 710.148 kb on + strand, within ABID97_RS28950 at 710.175 kb on + strand, within ABID97_RS28950 at 710.448 kb on + strand, within ABID97_RS28950 at 710.448 kb on + strand, within ABID97_RS28950 at 710.476 kb on - strand, within ABID97_RS28950 at 710.523 kb on + strand, within ABID97_RS28950 at 710.523 kb on + strand, within ABID97_RS28950 at 710.523 kb on + strand, within ABID97_RS28950 at 710.524 kb on - strand, within ABID97_RS28950 at 710.524 kb on - strand, within ABID97_RS28950 at 710.583 kb on + strand, within ABID97_RS28950 at 710.583 kb on + strand, within ABID97_RS28950 at 710.584 kb on - strand, within ABID97_RS28950 at 710.584 kb on - strand, within ABID97_RS28950 at 710.584 kb on - strand, within ABID97_RS28950 at 710.584 kb on - strand, within ABID97_RS28950 at 710.584 kb on - strand, within ABID97_RS28950 at 710.842 kb on - strand at 711.761 kb on + strand, within ABID97_RS28960
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 708,447 + ABID97_RS28940 0.33 -0.1 708,447 + ABID97_RS28940 0.33 -0.2 708,663 + +0.3 708,747 + -0.5 708,747 + -0.2 708,747 + -0.2 708,747 + +0.1 708,747 + +0.2 708,747 + +0.6 708,747 + -0.3 708,747 + +0.1 708,748 - -0.2 708,748 - -0.4 708,748 - +0.4 708,748 - +1.3 708,748 - -0.2 708,748 - -0.3 708,748 - -0.6 708,873 + +0.4 708,874 - +0.1 708,874 - +0.7 708,886 + +1.3 708,886 + -1.7 708,887 - -0.2 709,151 + ABID97_RS28945 0.62 -1.4 709,477 - ABID97_RS28950 0.10 -0.3 709,522 - ABID97_RS28950 0.13 +0.3 709,522 - ABID97_RS28950 0.13 +0.9 709,522 - ABID97_RS28950 0.13 +1.0 709,522 - ABID97_RS28950 0.13 +0.2 709,522 - ABID97_RS28950 0.13 +0.3 709,536 + ABID97_RS28950 0.14 +2.5 709,536 + ABID97_RS28950 0.14 -0.9 709,755 + ABID97_RS28950 0.29 +0.4 710,148 + ABID97_RS28950 0.54 -0.1 710,175 + ABID97_RS28950 0.56 +0.1 710,448 + ABID97_RS28950 0.74 -0.3 710,448 + ABID97_RS28950 0.74 +0.7 710,476 - ABID97_RS28950 0.76 +0.1 710,523 + ABID97_RS28950 0.79 +0.3 710,523 + ABID97_RS28950 0.79 +0.3 710,523 + ABID97_RS28950 0.79 -0.5 710,524 - ABID97_RS28950 0.79 +0.1 710,524 - ABID97_RS28950 0.79 -1.6 710,583 + ABID97_RS28950 0.83 +0.2 710,583 + ABID97_RS28950 0.83 -1.5 710,584 - ABID97_RS28950 0.83 +1.2 710,584 - ABID97_RS28950 0.83 -1.3 710,584 - ABID97_RS28950 0.83 +0.3 710,584 - ABID97_RS28950 0.83 +0.4 710,584 - ABID97_RS28950 0.83 +0.3 710,842 - -0.9 711,761 + ABID97_RS28960 0.27 -1.7
Or see this region's nucleotide sequence