Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28515 and ABID97_RS28520 are separated by 65 nucleotides ABID97_RS28520 and ABID97_RS28525 overlap by 4 nucleotides
ABID97_RS28515: ABID97_RS28515 - IclR family transcriptional regulator, at 623,827 to 624,609
_RS28515
ABID97_RS28520: ABID97_RS28520 - leucyl aminopeptidase, at 624,675 to 625,727
_RS28520
ABID97_RS28525: ABID97_RS28525 - alpha/beta hydrolase, at 625,724 to 626,548
_RS28525
Position (kb) 624
625
626 Strain fitness (log2 ratio) -2
-1
0
1
2 at 623.694 kb on + strand at 623.749 kb on + strand at 623.803 kb on + strand at 623.804 kb on - strand at 623.804 kb on - strand at 623.804 kb on - strand at 623.804 kb on - strand at 623.823 kb on - strand at 623.823 kb on - strand at 623.823 kb on - strand at 623.962 kb on + strand, within ABID97_RS28515 at 623.962 kb on + strand, within ABID97_RS28515 at 623.962 kb on + strand, within ABID97_RS28515 at 623.962 kb on + strand, within ABID97_RS28515 at 623.963 kb on - strand, within ABID97_RS28515 at 624.037 kb on + strand, within ABID97_RS28515 at 624.037 kb on + strand, within ABID97_RS28515 at 624.037 kb on + strand, within ABID97_RS28515 at 624.038 kb on - strand, within ABID97_RS28515 at 624.038 kb on - strand, within ABID97_RS28515 at 624.044 kb on + strand, within ABID97_RS28515 at 624.044 kb on + strand, within ABID97_RS28515 at 624.045 kb on - strand, within ABID97_RS28515 at 624.076 kb on + strand, within ABID97_RS28515 at 624.076 kb on + strand, within ABID97_RS28515 at 624.076 kb on + strand, within ABID97_RS28515 at 624.464 kb on + strand, within ABID97_RS28515 at 624.607 kb on + strand at 624.608 kb on - strand at 624.608 kb on - strand at 624.856 kb on + strand, within ABID97_RS28520 at 624.994 kb on + strand, within ABID97_RS28520 at 624.995 kb on - strand, within ABID97_RS28520 at 624.998 kb on + strand, within ABID97_RS28520 at 624.999 kb on - strand, within ABID97_RS28520 at 625.123 kb on - strand, within ABID97_RS28520 at 625.249 kb on + strand, within ABID97_RS28520 at 625.319 kb on - strand, within ABID97_RS28520 at 625.749 kb on + strand at 625.750 kb on - strand at 625.846 kb on + strand, within ABID97_RS28525 at 625.847 kb on - strand, within ABID97_RS28525 at 625.990 kb on - strand, within ABID97_RS28525 at 626.145 kb on + strand, within ABID97_RS28525 at 626.171 kb on - strand, within ABID97_RS28525 at 626.331 kb on + strand, within ABID97_RS28525 at 626.496 kb on + strand at 626.497 kb on - strand at 626.497 kb on - strand at 626.497 kb on - strand at 626.497 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 623,694 + -0.7 623,749 + -0.9 623,803 + -0.8 623,804 - +0.6 623,804 - -0.3 623,804 - -0.7 623,804 - -2.5 623,823 - -1.0 623,823 - +0.3 623,823 - -1.3 623,962 + ABID97_RS28515 0.17 -0.7 623,962 + ABID97_RS28515 0.17 -0.2 623,962 + ABID97_RS28515 0.17 +0.2 623,962 + ABID97_RS28515 0.17 +0.8 623,963 - ABID97_RS28515 0.17 +0.6 624,037 + ABID97_RS28515 0.27 -0.5 624,037 + ABID97_RS28515 0.27 -0.7 624,037 + ABID97_RS28515 0.27 -0.2 624,038 - ABID97_RS28515 0.27 -1.3 624,038 - ABID97_RS28515 0.27 +0.9 624,044 + ABID97_RS28515 0.28 -0.9 624,044 + ABID97_RS28515 0.28 -1.9 624,045 - ABID97_RS28515 0.28 -0.3 624,076 + ABID97_RS28515 0.32 -0.2 624,076 + ABID97_RS28515 0.32 -0.2 624,076 + ABID97_RS28515 0.32 +0.8 624,464 + ABID97_RS28515 0.81 -0.2 624,607 + +0.3 624,608 - +0.6 624,608 - +0.6 624,856 + ABID97_RS28520 0.17 -0.6 624,994 + ABID97_RS28520 0.30 +1.0 624,995 - ABID97_RS28520 0.30 +2.0 624,998 + ABID97_RS28520 0.31 -0.1 624,999 - ABID97_RS28520 0.31 +0.7 625,123 - ABID97_RS28520 0.43 +0.1 625,249 + ABID97_RS28520 0.55 +1.0 625,319 - ABID97_RS28520 0.61 -0.5 625,749 + +0.5 625,750 - +0.0 625,846 + ABID97_RS28525 0.15 -0.6 625,847 - ABID97_RS28525 0.15 +1.0 625,990 - ABID97_RS28525 0.32 +0.7 626,145 + ABID97_RS28525 0.51 +0.4 626,171 - ABID97_RS28525 0.54 +0.7 626,331 + ABID97_RS28525 0.74 +0.2 626,496 + +0.5 626,497 - +0.3 626,497 - -1.7 626,497 - -0.5 626,497 - +0.1
Or see this region's nucleotide sequence