Strain Fitness in Variovorax sp. OAS795 around ABID97_RS28215

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS28205 and ABID97_RS28210 overlap by 1 nucleotidesABID97_RS28210 and ABID97_RS28215 are separated by 41 nucleotidesABID97_RS28215 and ABID97_RS28220 are separated by 17 nucleotidesABID97_RS28220 and ABID97_RS28225 overlap by 4 nucleotides ABID97_RS28205: ABID97_RS28205 - AMP-binding protein, at 562,527 to 564,029 _RS28205 ABID97_RS28210: ABID97_RS28210 - PaaI family thioesterase, at 564,029 to 564,448 _RS28210 ABID97_RS28215: ABID97_RS28215 - tripartite tricarboxylate transporter substrate binding protein, at 564,490 to 565,455 _RS28215 ABID97_RS28220: ABID97_RS28220 - SDR family oxidoreductase, at 565,473 to 566,291 _RS28220 ABID97_RS28225: ABID97_RS28225 - PaaI family thioesterase, at 566,288 to 566,722 _RS28225 Position (kb) 564 565 566Strain fitness (log2 ratio) -1 0 1at 565.046 kb on - strand, within ABID97_RS28215at 566.187 kb on + strand, within ABID97_RS28220

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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565,046 - ABID97_RS28215 0.58 +0.6
566,187 + ABID97_RS28220 0.87 -0.9

Or see this region's nucleotide sequence