Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28015 and ABID97_RS28020 overlap by 11 nucleotides ABID97_RS28020 and ABID97_RS28025 overlap by 11 nucleotides ABID97_RS28025 and ABID97_RS28030 overlap by 10 nucleotides
ABID97_RS28015: ABID97_RS28015 - cupin domain-containing protein, at 520,669 to 521,280
_RS28015
ABID97_RS28020: ABID97_RS28020 - ABC transporter ATP-binding protein, at 521,270 to 521,977
_RS28020
ABID97_RS28025: ABID97_RS28025 - branched-chain amino acid ABC transporter ATP-binding protein/permease, at 521,967 to 523,736
_RS28025
ABID97_RS28030: ABID97_RS28030 - branched-chain amino acid ABC transporter permease, at 523,727 to 524,575
_RS28030
Position (kb) 521
522
523
524 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 521.361 kb on + strand, within ABID97_RS28020 at 521.362 kb on - strand, within ABID97_RS28020 at 521.964 kb on - strand at 522.449 kb on - strand, within ABID97_RS28025 at 522.997 kb on + strand, within ABID97_RS28025 at 523.114 kb on + strand, within ABID97_RS28025 at 523.115 kb on - strand, within ABID97_RS28025 at 523.253 kb on - strand, within ABID97_RS28025 at 523.253 kb on - strand, within ABID97_RS28025 at 523.306 kb on + strand, within ABID97_RS28025 at 523.360 kb on + strand, within ABID97_RS28025 at 523.361 kb on - strand, within ABID97_RS28025 at 523.361 kb on - strand, within ABID97_RS28025 at 523.630 kb on + strand at 524.318 kb on + strand, within ABID97_RS28030 at 524.418 kb on + strand, within ABID97_RS28030 at 524.702 kb on + strand at 524.703 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 521,361 + ABID97_RS28020 0.13 -3.0 521,362 - ABID97_RS28020 0.13 +0.1 521,964 - -0.0 522,449 - ABID97_RS28025 0.27 +0.7 522,997 + ABID97_RS28025 0.58 +0.7 523,114 + ABID97_RS28025 0.65 -0.7 523,115 - ABID97_RS28025 0.65 -1.9 523,253 - ABID97_RS28025 0.73 -1.0 523,253 - ABID97_RS28025 0.73 -1.7 523,306 + ABID97_RS28025 0.76 -1.7 523,360 + ABID97_RS28025 0.79 -0.3 523,361 - ABID97_RS28025 0.79 -0.3 523,361 - ABID97_RS28025 0.79 -2.3 523,630 + +0.9 524,318 + ABID97_RS28030 0.70 -0.1 524,418 + ABID97_RS28030 0.81 -1.6 524,702 + +0.3 524,703 - +0.1
Or see this region's nucleotide sequence