Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26690 and ABID97_RS26695 are separated by 46 nucleotides ABID97_RS26695 and ABID97_RS26700 are separated by 95 nucleotides
ABID97_RS26690: ABID97_RS26690 - tripartite tricarboxylate transporter substrate binding protein, at 261,477 to 262,490
_RS26690
ABID97_RS26695: ABID97_RS26695 - M81 family metallopeptidase, at 262,537 to 264,027
_RS26695
ABID97_RS26700: ABID97_RS26700 - Ku protein, at 264,123 to 265,064
_RS26700
Position (kb) 262
263
264
265 Strain fitness (log2 ratio) -1
0
1
2 at 261.764 kb on + strand, within ABID97_RS26690 at 261.993 kb on + strand, within ABID97_RS26690 at 262.053 kb on + strand, within ABID97_RS26690 at 262.429 kb on - strand at 262.429 kb on - strand at 262.843 kb on + strand, within ABID97_RS26695 at 262.843 kb on + strand, within ABID97_RS26695 at 263.134 kb on - strand, within ABID97_RS26695 at 263.340 kb on - strand, within ABID97_RS26695 at 263.815 kb on + strand, within ABID97_RS26695 at 263.815 kb on + strand, within ABID97_RS26695 at 264.267 kb on + strand, within ABID97_RS26700 at 264.267 kb on + strand, within ABID97_RS26700 at 264.268 kb on - strand, within ABID97_RS26700 at 264.447 kb on + strand, within ABID97_RS26700 at 264.448 kb on - strand, within ABID97_RS26700 at 264.462 kb on + strand, within ABID97_RS26700 at 264.465 kb on + strand, within ABID97_RS26700 at 264.466 kb on - strand, within ABID97_RS26700 at 264.466 kb on - strand, within ABID97_RS26700 at 264.499 kb on - strand, within ABID97_RS26700 at 264.739 kb on - strand, within ABID97_RS26700
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 261,764 + ABID97_RS26690 0.28 -0.1 261,993 + ABID97_RS26690 0.51 +2.0 262,053 + ABID97_RS26690 0.57 +0.2 262,429 - +0.6 262,429 - -0.3 262,843 + ABID97_RS26695 0.21 +0.9 262,843 + ABID97_RS26695 0.21 +2.2 263,134 - ABID97_RS26695 0.40 -0.9 263,340 - ABID97_RS26695 0.54 -0.2 263,815 + ABID97_RS26695 0.86 +2.3 263,815 + ABID97_RS26695 0.86 +0.2 264,267 + ABID97_RS26700 0.15 +1.0 264,267 + ABID97_RS26700 0.15 -0.2 264,268 - ABID97_RS26700 0.15 +1.7 264,447 + ABID97_RS26700 0.34 -0.7 264,448 - ABID97_RS26700 0.35 -0.1 264,462 + ABID97_RS26700 0.36 +0.2 264,465 + ABID97_RS26700 0.36 -0.5 264,466 - ABID97_RS26700 0.36 -0.1 264,466 - ABID97_RS26700 0.36 -0.4 264,499 - ABID97_RS26700 0.40 -0.5 264,739 - ABID97_RS26700 0.65 +0.4
Or see this region's nucleotide sequence