Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26120 and ABID97_RS26125 are separated by 242 nucleotides ABID97_RS26125 and ABID97_RS26130 are separated by 56 nucleotides
ABID97_RS26120: ABID97_RS26120 - hypothetical protein, at 147,906 to 149,237
_RS26120
ABID97_RS26125: ABID97_RS26125 - ABC transporter substrate-binding protein, at 149,480 to 150,412
_RS26125
ABID97_RS26130: ABID97_RS26130 - amino acid ABC transporter permease/ATP-binding protein, at 150,469 to 152,115
_RS26130
Position (kb) 149
150
151 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 148.673 kb on - strand, within ABID97_RS26120 at 148.703 kb on - strand, within ABID97_RS26120 at 148.703 kb on - strand, within ABID97_RS26120 at 148.753 kb on + strand, within ABID97_RS26120 at 149.123 kb on - strand at 149.332 kb on + strand at 149.332 kb on + strand at 149.333 kb on - strand at 149.405 kb on - strand at 149.747 kb on + strand, within ABID97_RS26125 at 149.747 kb on + strand, within ABID97_RS26125 at 149.748 kb on - strand, within ABID97_RS26125 at 149.748 kb on - strand, within ABID97_RS26125 at 149.811 kb on - strand, within ABID97_RS26125 at 149.886 kb on - strand, within ABID97_RS26125 at 149.928 kb on - strand, within ABID97_RS26125 at 150.033 kb on - strand, within ABID97_RS26125 at 150.033 kb on - strand, within ABID97_RS26125 at 150.110 kb on + strand, within ABID97_RS26125 at 150.164 kb on + strand, within ABID97_RS26125 at 150.165 kb on - strand, within ABID97_RS26125 at 150.165 kb on - strand, within ABID97_RS26125 at 150.487 kb on + strand at 150.487 kb on + strand at 150.487 kb on + strand at 151.049 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 148,673 - ABID97_RS26120 0.58 -0.2 148,703 - ABID97_RS26120 0.60 +0.0 148,703 - ABID97_RS26120 0.60 +4.8 148,753 + ABID97_RS26120 0.64 +0.0 149,123 - -1.4 149,332 + -0.2 149,332 + -2.9 149,333 - -0.3 149,405 - -0.3 149,747 + ABID97_RS26125 0.29 +1.3 149,747 + ABID97_RS26125 0.29 +1.4 149,748 - ABID97_RS26125 0.29 -0.1 149,748 - ABID97_RS26125 0.29 -0.4 149,811 - ABID97_RS26125 0.35 +0.9 149,886 - ABID97_RS26125 0.44 +0.0 149,928 - ABID97_RS26125 0.48 +0.3 150,033 - ABID97_RS26125 0.59 +0.6 150,033 - ABID97_RS26125 0.59 -0.1 150,110 + ABID97_RS26125 0.68 +0.3 150,164 + ABID97_RS26125 0.73 -0.1 150,165 - ABID97_RS26125 0.73 -1.5 150,165 - ABID97_RS26125 0.73 -0.3 150,487 + -0.4 150,487 + +0.5 150,487 + +0.4 151,049 - +1.3
Or see this region's nucleotide sequence