Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25715

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25710 and ABID97_RS25715 overlap by 4 nucleotidesABID97_RS25715 and ABID97_RS25720 are separated by 20 nucleotides ABID97_RS25710: ABID97_RS25710 - aldehyde dehydrogenase family protein, at 61,177 to 62,685 _RS25710 ABID97_RS25715: ABID97_RS25715 - cupin domain-containing protein, at 62,682 to 63,401 _RS25715 ABID97_RS25720: ABID97_RS25720 - FAD-binding oxidoreductase, at 63,422 to 64,747 _RS25720 Position (kb) 62 63 64Strain fitness (log2 ratio) -1 0 1at 62.585 kb on - strandat 62.585 kb on - strandat 63.375 kb on + strandat 63.375 kb on + strandat 63.729 kb on - strand, within ABID97_RS25720at 63.729 kb on - strand, within ABID97_RS25720

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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62,585 - +0.1
62,585 - -0.4
63,375 + -1.5
63,375 + +0.6
63,729 - ABID97_RS25720 0.23 +0.3
63,729 - ABID97_RS25720 0.23 +0.5

Or see this region's nucleotide sequence