Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25625

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25615 and ABID97_RS25620 are separated by 10 nucleotidesABID97_RS25620 and ABID97_RS25625 overlap by 1 nucleotidesABID97_RS25625 and ABID97_RS25630 are separated by 10 nucleotides ABID97_RS25615: ABID97_RS25615 - DUF4331 domain-containing protein, at 42,281 to 43,765 _RS25615 ABID97_RS25620: ABID97_RS25620 - hypothetical protein, at 43,776 to 44,075 _RS25620 ABID97_RS25625: ABID97_RS25625 - tetratricopeptide repeat protein, at 44,075 to 45,268 _RS25625 ABID97_RS25630: ABID97_RS25630 - HupE/UreJ family protein, at 45,279 to 46,430 _RS25630 Position (kb) 44 45 46Strain fitness (log2 ratio) -1 0 1at 43.305 kb on - strand, within ABID97_RS25615at 43.734 kb on - strandat 43.944 kb on + strand, within ABID97_RS25620at 43.945 kb on - strand, within ABID97_RS25620at 44.841 kb on - strand, within ABID97_RS25625at 44.865 kb on - strand, within ABID97_RS25625at 45.378 kb on + strandat 45.378 kb on + strandat 45.528 kb on + strand, within ABID97_RS25630at 45.529 kb on - strand, within ABID97_RS25630

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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43,305 - ABID97_RS25615 0.69 -0.3
43,734 - -1.1
43,944 + ABID97_RS25620 0.56 +0.1
43,945 - ABID97_RS25620 0.56 +0.5
44,841 - ABID97_RS25625 0.64 +0.9
44,865 - ABID97_RS25625 0.66 +0.6
45,378 + +0.1
45,378 + +0.5
45,528 + ABID97_RS25630 0.22 -1.2
45,529 - ABID97_RS25630 0.22 +0.1

Or see this region's nucleotide sequence