Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25145 and ABID97_RS25150 are separated by 6 nucleotides ABID97_RS25150 and ABID97_RS25155 are separated by 95 nucleotides ABID97_RS25155 and ABID97_RS25160 are separated by 653 nucleotides
ABID97_RS25145: ABID97_RS25145 - AraC family transcriptional regulator, at 5,209,764 to 5,210,792
_RS25145
ABID97_RS25150: ABID97_RS25150 - thioredoxin family protein, at 5,210,799 to 5,211,128
_RS25150
ABID97_RS25155: ABID97_RS25155 - HAD family phosphatase, at 5,211,224 to 5,211,916
_RS25155
ABID97_RS25160: ABID97_RS25160 - SDR family oxidoreductase, at 5,212,570 to 5,213,340
_RS25160
Position (kb) 5211
5212 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5210.235 kb on + strand, within ABID97_RS25145 at 5210.235 kb on + strand, within ABID97_RS25145 at 5210.386 kb on - strand, within ABID97_RS25145 at 5210.386 kb on - strand, within ABID97_RS25145 at 5210.790 kb on + strand at 5210.986 kb on + strand, within ABID97_RS25150 at 5210.987 kb on - strand, within ABID97_RS25150 at 5211.348 kb on + strand, within ABID97_RS25155 at 5211.348 kb on + strand, within ABID97_RS25155 at 5211.459 kb on + strand, within ABID97_RS25155 at 5211.459 kb on + strand, within ABID97_RS25155 at 5211.459 kb on + strand, within ABID97_RS25155 at 5211.459 kb on + strand, within ABID97_RS25155 at 5211.459 kb on + strand, within ABID97_RS25155 at 5211.460 kb on - strand, within ABID97_RS25155 at 5211.460 kb on - strand, within ABID97_RS25155 at 5211.460 kb on - strand, within ABID97_RS25155 at 5211.864 kb on - strand at 5211.906 kb on + strand at 5211.906 kb on + strand at 5211.952 kb on + strand at 5211.953 kb on - strand at 5211.953 kb on - strand at 5212.267 kb on + strand at 5212.268 kb on - strand at 5212.332 kb on - strand at 5212.608 kb on + strand at 5212.609 kb on - strand at 5212.622 kb on + strand at 5212.622 kb on + strand at 5212.622 kb on + strand at 5212.622 kb on + strand at 5212.622 kb on + strand at 5212.623 kb on - strand at 5212.646 kb on + strand at 5212.650 kb on + strand, within ABID97_RS25160 at 5212.854 kb on - strand, within ABID97_RS25160 at 5212.859 kb on + strand, within ABID97_RS25160 at 5212.859 kb on + strand, within ABID97_RS25160 at 5212.859 kb on + strand, within ABID97_RS25160 at 5212.859 kb on + strand, within ABID97_RS25160 at 5212.859 kb on + strand, within ABID97_RS25160 at 5212.859 kb on + strand, within ABID97_RS25160 at 5212.860 kb on - strand, within ABID97_RS25160 at 5212.860 kb on - strand, within ABID97_RS25160 at 5212.860 kb on - strand, within ABID97_RS25160 at 5212.860 kb on - strand, within ABID97_RS25160 at 5212.860 kb on - strand, within ABID97_RS25160
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 5,210,235 + ABID97_RS25145 0.46 -0.0 5,210,235 + ABID97_RS25145 0.46 +0.2 5,210,386 - ABID97_RS25145 0.60 -0.1 5,210,386 - ABID97_RS25145 0.60 +0.1 5,210,790 + +0.3 5,210,986 + ABID97_RS25150 0.57 -0.6 5,210,987 - ABID97_RS25150 0.57 -0.7 5,211,348 + ABID97_RS25155 0.18 +0.2 5,211,348 + ABID97_RS25155 0.18 -0.1 5,211,459 + ABID97_RS25155 0.34 +0.3 5,211,459 + ABID97_RS25155 0.34 +3.1 5,211,459 + ABID97_RS25155 0.34 +0.7 5,211,459 + ABID97_RS25155 0.34 -1.3 5,211,459 + ABID97_RS25155 0.34 -0.9 5,211,460 - ABID97_RS25155 0.34 -0.7 5,211,460 - ABID97_RS25155 0.34 +0.7 5,211,460 - ABID97_RS25155 0.34 +0.8 5,211,864 - +0.4 5,211,906 + +0.9 5,211,906 + -0.1 5,211,952 + +0.2 5,211,953 - -0.3 5,211,953 - +0.6 5,212,267 + -0.3 5,212,268 - -0.2 5,212,332 - +0.4 5,212,608 + -2.4 5,212,609 - +0.1 5,212,622 + +0.9 5,212,622 + +0.6 5,212,622 + -0.3 5,212,622 + +0.1 5,212,622 + -0.5 5,212,623 - +0.9 5,212,646 + -0.8 5,212,650 + ABID97_RS25160 0.10 -1.3 5,212,854 - ABID97_RS25160 0.37 +0.3 5,212,859 + ABID97_RS25160 0.37 -0.2 5,212,859 + ABID97_RS25160 0.37 +0.3 5,212,859 + ABID97_RS25160 0.37 -0.0 5,212,859 + ABID97_RS25160 0.37 +0.2 5,212,859 + ABID97_RS25160 0.37 -0.2 5,212,859 + ABID97_RS25160 0.37 +0.2 5,212,860 - ABID97_RS25160 0.38 +0.3 5,212,860 - ABID97_RS25160 0.38 +0.3 5,212,860 - ABID97_RS25160 0.38 +0.1 5,212,860 - ABID97_RS25160 0.38 +0.6 5,212,860 - ABID97_RS25160 0.38 +0.4
Or see this region's nucleotide sequence