Strain Fitness in Variovorax sp. OAS795 around ABID97_RS23210

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS23200 and ABID97_RS23205 are separated by 56 nucleotidesABID97_RS23205 and ABID97_RS23210 are separated by 37 nucleotidesABID97_RS23210 and ABID97_RS23215 are separated by 82 nucleotides ABID97_RS23200: ABID97_RS23200 - VacJ family lipoprotein, at 4,794,738 to 4,795,424 _RS23200 ABID97_RS23205: ABID97_RS23205 - outer membrane lipid asymmetry maintenance protein MlaD, at 4,795,481 to 4,795,975 _RS23205 ABID97_RS23210: ABID97_RS23210 - lipid asymmetry maintenance ABC transporter permease subunit MlaE, at 4,796,013 to 4,796,795 _RS23210 ABID97_RS23215: ABID97_RS23215 - ABC transporter ATP-binding protein, at 4,796,878 to 4,797,732 _RS23215 Position (kb) 4796 4797Strain fitness (log2 ratio) -2 -1 0 1 2at 4795.018 kb on + strand, within ABID97_RS23200at 4795.018 kb on + strand, within ABID97_RS23200at 4795.018 kb on + strand, within ABID97_RS23200at 4795.019 kb on - strand, within ABID97_RS23200at 4795.019 kb on - strand, within ABID97_RS23200at 4795.273 kb on + strand, within ABID97_RS23200at 4795.273 kb on + strand, within ABID97_RS23200at 4795.274 kb on - strand, within ABID97_RS23200at 4795.443 kb on + strandat 4795.516 kb on + strandat 4795.516 kb on + strandat 4795.539 kb on + strand, within ABID97_RS23205at 4795.540 kb on - strand, within ABID97_RS23205at 4795.647 kb on + strand, within ABID97_RS23205at 4795.647 kb on + strand, within ABID97_RS23205at 4795.648 kb on - strand, within ABID97_RS23205at 4795.648 kb on - strand, within ABID97_RS23205at 4795.857 kb on + strand, within ABID97_RS23205at 4795.858 kb on - strand, within ABID97_RS23205at 4795.858 kb on - strand, within ABID97_RS23205at 4795.858 kb on - strand, within ABID97_RS23205at 4795.952 kb on + strandat 4795.952 kb on + strandat 4795.952 kb on + strandat 4795.952 kb on + strandat 4795.952 kb on + strandat 4795.952 kb on + strandat 4795.952 kb on + strandat 4795.953 kb on - strandat 4795.953 kb on - strandat 4795.953 kb on - strandat 4795.953 kb on - strandat 4795.953 kb on - strandat 4795.953 kb on - strandat 4795.953 kb on - strandat 4795.953 kb on - strandat 4795.953 kb on - strandat 4795.953 kb on - strandat 4795.953 kb on - strandat 4795.953 kb on - strandat 4795.953 kb on - strandat 4795.961 kb on - strandat 4795.989 kb on + strandat 4795.989 kb on + strandat 4796.019 kb on - strandat 4796.284 kb on + strand, within ABID97_RS23210at 4796.285 kb on - strand, within ABID97_RS23210at 4796.285 kb on - strand, within ABID97_RS23210at 4796.285 kb on - strand, within ABID97_RS23210at 4796.456 kb on + strand, within ABID97_RS23210at 4796.569 kb on + strand, within ABID97_RS23210at 4796.570 kb on - strand, within ABID97_RS23210at 4796.572 kb on + strand, within ABID97_RS23210at 4796.572 kb on + strand, within ABID97_RS23210at 4796.572 kb on + strand, within ABID97_RS23210at 4796.573 kb on - strand, within ABID97_RS23210at 4796.573 kb on - strand, within ABID97_RS23210at 4796.635 kb on + strand, within ABID97_RS23210at 4796.635 kb on + strand, within ABID97_RS23210at 4796.635 kb on + strand, within ABID97_RS23210at 4796.636 kb on - strand, within ABID97_RS23210at 4796.765 kb on - strandat 4796.765 kb on - strandat 4796.795 kb on + strandat 4796.927 kb on + strandat 4797.133 kb on + strand, within ABID97_RS23215at 4797.133 kb on + strand, within ABID97_RS23215at 4797.133 kb on + strand, within ABID97_RS23215at 4797.191 kb on + strand, within ABID97_RS23215at 4797.191 kb on + strand, within ABID97_RS23215at 4797.191 kb on + strand, within ABID97_RS23215at 4797.191 kb on + strand, within ABID97_RS23215at 4797.192 kb on - strand, within ABID97_RS23215at 4797.192 kb on - strand, within ABID97_RS23215at 4797.192 kb on - strand, within ABID97_RS23215at 4797.192 kb on - strand, within ABID97_RS23215at 4797.192 kb on - strand, within ABID97_RS23215at 4797.452 kb on + strand, within ABID97_RS23215at 4797.452 kb on + strand, within ABID97_RS23215at 4797.452 kb on + strand, within ABID97_RS23215at 4797.452 kb on + strand, within ABID97_RS23215at 4797.452 kb on + strand, within ABID97_RS23215at 4797.452 kb on + strand, within ABID97_RS23215at 4797.452 kb on + strand, within ABID97_RS23215at 4797.453 kb on - strand, within ABID97_RS23215at 4797.453 kb on - strand, within ABID97_RS23215at 4797.453 kb on - strand, within ABID97_RS23215at 4797.668 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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4,795,018 + ABID97_RS23200 0.41 -0.2
4,795,018 + ABID97_RS23200 0.41 -1.2
4,795,018 + ABID97_RS23200 0.41 +0.2
4,795,019 - ABID97_RS23200 0.41 +0.7
4,795,019 - ABID97_RS23200 0.41 -0.1
4,795,273 + ABID97_RS23200 0.78 +0.3
4,795,273 + ABID97_RS23200 0.78 +0.2
4,795,274 - ABID97_RS23200 0.78 -0.1
4,795,443 + +1.4
4,795,516 + +0.3
4,795,516 + +0.2
4,795,539 + ABID97_RS23205 0.12 +0.4
4,795,540 - ABID97_RS23205 0.12 +0.4
4,795,647 + ABID97_RS23205 0.34 +0.0
4,795,647 + ABID97_RS23205 0.34 +0.1
4,795,648 - ABID97_RS23205 0.34 -1.8
4,795,648 - ABID97_RS23205 0.34 +0.0
4,795,857 + ABID97_RS23205 0.76 +1.2
4,795,858 - ABID97_RS23205 0.76 +0.6
4,795,858 - ABID97_RS23205 0.76 +0.2
4,795,858 - ABID97_RS23205 0.76 +0.1
4,795,952 + -1.3
4,795,952 + +0.2
4,795,952 + +0.4
4,795,952 + +0.4
4,795,952 + +0.2
4,795,952 + +0.2
4,795,952 + +0.2
4,795,953 - -0.1
4,795,953 - -1.1
4,795,953 - +0.5
4,795,953 - +2.0
4,795,953 - +0.3
4,795,953 - -0.1
4,795,953 - +0.7
4,795,953 - -1.6
4,795,953 - +0.5
4,795,953 - -0.0
4,795,953 - -0.3
4,795,953 - +0.6
4,795,953 - +0.5
4,795,961 - +0.0
4,795,989 + -0.8
4,795,989 + -0.2
4,796,019 - +0.4
4,796,284 + ABID97_RS23210 0.35 +1.1
4,796,285 - ABID97_RS23210 0.35 -0.8
4,796,285 - ABID97_RS23210 0.35 -2.4
4,796,285 - ABID97_RS23210 0.35 -0.3
4,796,456 + ABID97_RS23210 0.57 -1.0
4,796,569 + ABID97_RS23210 0.71 -1.9
4,796,570 - ABID97_RS23210 0.71 -0.4
4,796,572 + ABID97_RS23210 0.71 -2.2
4,796,572 + ABID97_RS23210 0.71 +0.1
4,796,572 + ABID97_RS23210 0.71 -0.7
4,796,573 - ABID97_RS23210 0.72 -0.1
4,796,573 - ABID97_RS23210 0.72 -0.7
4,796,635 + ABID97_RS23210 0.79 -0.3
4,796,635 + ABID97_RS23210 0.79 +0.3
4,796,635 + ABID97_RS23210 0.79 +0.5
4,796,636 - ABID97_RS23210 0.80 -0.8
4,796,765 - -1.2
4,796,765 - -0.3
4,796,795 + +0.1
4,796,927 + +0.1
4,797,133 + ABID97_RS23215 0.30 +0.9
4,797,133 + ABID97_RS23215 0.30 -0.7
4,797,133 + ABID97_RS23215 0.30 -0.3
4,797,191 + ABID97_RS23215 0.37 -0.0
4,797,191 + ABID97_RS23215 0.37 -0.3
4,797,191 + ABID97_RS23215 0.37 +0.5
4,797,191 + ABID97_RS23215 0.37 +0.0
4,797,192 - ABID97_RS23215 0.37 -2.0
4,797,192 - ABID97_RS23215 0.37 +0.1
4,797,192 - ABID97_RS23215 0.37 +0.1
4,797,192 - ABID97_RS23215 0.37 +0.6
4,797,192 - ABID97_RS23215 0.37 -0.0
4,797,452 + ABID97_RS23215 0.67 -0.7
4,797,452 + ABID97_RS23215 0.67 +0.9
4,797,452 + ABID97_RS23215 0.67 +0.4
4,797,452 + ABID97_RS23215 0.67 +1.0
4,797,452 + ABID97_RS23215 0.67 +0.1
4,797,452 + ABID97_RS23215 0.67 +0.5
4,797,452 + ABID97_RS23215 0.67 +0.5
4,797,453 - ABID97_RS23215 0.67 +0.7
4,797,453 - ABID97_RS23215 0.67 +0.3
4,797,453 - ABID97_RS23215 0.67 -0.3
4,797,668 - -0.0

Or see this region's nucleotide sequence