Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS23065 and ABID97_RS23070 are separated by 4 nucleotides ABID97_RS23070 and ABID97_RS23075 are separated by 78 nucleotides ABID97_RS23075 and ABID97_RS23080 are separated by 13 nucleotides ABID97_RS23080 and ABID97_RS23085 are separated by 62 nucleotides ABID97_RS23085 and ABID97_RS23090 overlap by 11 nucleotides
ABID97_RS23065: ABID97_RS23065 - trypsin-like peptidase domain-containing protein, at 4,774,098 to 4,775,258
_RS23065
ABID97_RS23070: ABID97_RS23070 - twin-arginine translocase subunit TatC, at 4,775,263 to 4,776,072
_RS23070
ABID97_RS23075: ABID97_RS23075 - Sec-independent protein translocase protein TatB, at 4,776,151 to 4,776,609
_RS23075
ABID97_RS23080: ABID97_RS23080 - Sec-independent protein translocase subunit TatA, at 4,776,623 to 4,776,871
_RS23080
ABID97_RS23085: ABID97_RS23085 - histidine triad nucleotide-binding protein, at 4,776,934 to 4,777,293
_RS23085
ABID97_RS23090: ABID97_RS23090 - hypothetical protein, at 4,777,283 to 4,777,672
_RS23090
Position (kb) 4776
4777 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4775.324 kb on + strand at 4776.153 kb on - strand at 4776.612 kb on - strand at 4776.612 kb on - strand at 4776.612 kb on - strand at 4776.612 kb on - strand at 4776.612 kb on - strand at 4776.612 kb on - strand at 4776.929 kb on - strand at 4777.226 kb on + strand, within ABID97_RS23085 at 4777.226 kb on + strand, within ABID97_RS23085 at 4777.227 kb on - strand, within ABID97_RS23085 at 4777.431 kb on + strand, within ABID97_RS23090 at 4777.431 kb on + strand, within ABID97_RS23090 at 4777.431 kb on + strand, within ABID97_RS23090 at 4777.431 kb on + strand, within ABID97_RS23090 at 4777.432 kb on - strand, within ABID97_RS23090 at 4777.432 kb on - strand, within ABID97_RS23090 at 4777.432 kb on - strand, within ABID97_RS23090 at 4777.432 kb on - strand, within ABID97_RS23090 at 4777.432 kb on - strand, within ABID97_RS23090 at 4777.607 kb on - strand, within ABID97_RS23090 at 4777.608 kb on + strand, within ABID97_RS23090 at 4777.608 kb on + strand, within ABID97_RS23090 at 4777.608 kb on + strand, within ABID97_RS23090 at 4777.608 kb on + strand, within ABID97_RS23090 at 4777.608 kb on + strand, within ABID97_RS23090 at 4777.608 kb on + strand, within ABID97_RS23090 at 4777.608 kb on + strand, within ABID97_RS23090 at 4777.608 kb on + strand, within ABID97_RS23090 at 4777.608 kb on + strand, within ABID97_RS23090 at 4777.608 kb on + strand, within ABID97_RS23090 at 4777.608 kb on + strand, within ABID97_RS23090 at 4777.608 kb on + strand, within ABID97_RS23090 at 4777.608 kb on + strand, within ABID97_RS23090 at 4777.608 kb on + strand, within ABID97_RS23090 at 4777.609 kb on - strand, within ABID97_RS23090 at 4777.609 kb on - strand, within ABID97_RS23090 at 4777.609 kb on - strand, within ABID97_RS23090 at 4777.609 kb on - strand, within ABID97_RS23090
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 4,775,324 + -1.7 4,776,153 - -1.2 4,776,612 - -1.5 4,776,612 - -4.5 4,776,612 - -1.6 4,776,612 - -0.3 4,776,612 - -1.6 4,776,612 - -0.7 4,776,929 - +0.7 4,777,226 + ABID97_RS23085 0.81 -0.1 4,777,226 + ABID97_RS23085 0.81 -0.5 4,777,227 - ABID97_RS23085 0.81 +1.1 4,777,431 + ABID97_RS23090 0.38 +0.4 4,777,431 + ABID97_RS23090 0.38 +0.3 4,777,431 + ABID97_RS23090 0.38 +0.7 4,777,431 + ABID97_RS23090 0.38 +0.5 4,777,432 - ABID97_RS23090 0.38 +0.5 4,777,432 - ABID97_RS23090 0.38 +0.0 4,777,432 - ABID97_RS23090 0.38 -1.0 4,777,432 - ABID97_RS23090 0.38 +0.0 4,777,432 - ABID97_RS23090 0.38 -2.8 4,777,607 - ABID97_RS23090 0.83 +0.6 4,777,608 + ABID97_RS23090 0.83 +0.5 4,777,608 + ABID97_RS23090 0.83 +0.5 4,777,608 + ABID97_RS23090 0.83 +1.1 4,777,608 + ABID97_RS23090 0.83 -1.0 4,777,608 + ABID97_RS23090 0.83 +0.1 4,777,608 + ABID97_RS23090 0.83 +1.2 4,777,608 + ABID97_RS23090 0.83 -0.3 4,777,608 + ABID97_RS23090 0.83 +0.8 4,777,608 + ABID97_RS23090 0.83 -0.8 4,777,608 + ABID97_RS23090 0.83 -0.1 4,777,608 + ABID97_RS23090 0.83 -0.4 4,777,608 + ABID97_RS23090 0.83 -0.2 4,777,608 + ABID97_RS23090 0.83 -0.5 4,777,608 + ABID97_RS23090 0.83 +0.4 4,777,609 - ABID97_RS23090 0.84 -0.2 4,777,609 - ABID97_RS23090 0.84 -0.3 4,777,609 - ABID97_RS23090 0.84 -0.5 4,777,609 - ABID97_RS23090 0.84 -2.6
Or see this region's nucleotide sequence