Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22475 and ABID97_RS22480 are separated by 19 nucleotides ABID97_RS22480 and ABID97_RS22485 overlap by 4 nucleotides ABID97_RS22485 and ABID97_RS22490 are separated by 22 nucleotides ABID97_RS22490 and ABID97_RS22495 are separated by 167 nucleotides
ABID97_RS22475: ABID97_RS22475 - AraC family transcriptional regulator, at 4,654,024 to 4,655,037
_RS22475
ABID97_RS22480: ABID97_RS22480 - hypothetical protein, at 4,655,057 to 4,655,617
_RS22480
ABID97_RS22485: ABID97_RS22485 - PrsW family glutamic-type intramembrane protease, at 4,655,614 to 4,656,804
_RS22485
ABID97_RS22490: ABID97_RS22490 - extensin family protein, at 4,656,827 to 4,657,618
_RS22490
ABID97_RS22495: ABID97_RS22495 - serine hydrolase, at 4,657,786 to 4,659,357
_RS22495
Position (kb) 4655
4656
4657 Strain fitness (log2 ratio) -1
0
1 at 4654.709 kb on - strand, within ABID97_RS22475 at 4654.861 kb on + strand, within ABID97_RS22475 at 4654.861 kb on + strand, within ABID97_RS22475 at 4654.861 kb on + strand, within ABID97_RS22475 at 4654.862 kb on - strand, within ABID97_RS22475 at 4655.079 kb on + strand at 4655.080 kb on - strand at 4655.457 kb on - strand, within ABID97_RS22480 at 4655.459 kb on + strand, within ABID97_RS22480 at 4655.460 kb on - strand, within ABID97_RS22480 at 4655.534 kb on + strand, within ABID97_RS22480 at 4655.534 kb on + strand, within ABID97_RS22480 at 4655.534 kb on + strand, within ABID97_RS22480 at 4655.535 kb on - strand, within ABID97_RS22480 at 4655.535 kb on - strand, within ABID97_RS22480 at 4655.815 kb on + strand, within ABID97_RS22485 at 4655.816 kb on - strand, within ABID97_RS22485 at 4655.816 kb on - strand, within ABID97_RS22485 at 4656.157 kb on + strand, within ABID97_RS22485 at 4656.266 kb on - strand, within ABID97_RS22485 at 4656.266 kb on - strand, within ABID97_RS22485 at 4656.520 kb on + strand, within ABID97_RS22485 at 4656.521 kb on - strand, within ABID97_RS22485 at 4656.521 kb on - strand, within ABID97_RS22485 at 4656.521 kb on - strand, within ABID97_RS22485 at 4656.716 kb on - strand at 4657.095 kb on - strand, within ABID97_RS22490 at 4657.095 kb on - strand, within ABID97_RS22490 at 4657.304 kb on + strand, within ABID97_RS22490 at 4657.304 kb on + strand, within ABID97_RS22490 at 4657.304 kb on + strand, within ABID97_RS22490 at 4657.304 kb on + strand, within ABID97_RS22490 at 4657.305 kb on - strand, within ABID97_RS22490 at 4657.556 kb on + strand at 4657.557 kb on - strand at 4657.557 kb on - strand at 4657.663 kb on - strand at 4657.708 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 4,654,709 - ABID97_RS22475 0.68 -0.7 4,654,861 + ABID97_RS22475 0.83 -0.5 4,654,861 + ABID97_RS22475 0.83 +0.3 4,654,861 + ABID97_RS22475 0.83 +0.9 4,654,862 - ABID97_RS22475 0.83 +1.3 4,655,079 + -0.3 4,655,080 - +0.6 4,655,457 - ABID97_RS22480 0.71 -0.9 4,655,459 + ABID97_RS22480 0.72 +0.1 4,655,460 - ABID97_RS22480 0.72 +0.8 4,655,534 + ABID97_RS22480 0.85 +0.8 4,655,534 + ABID97_RS22480 0.85 -0.1 4,655,534 + ABID97_RS22480 0.85 +0.2 4,655,535 - ABID97_RS22480 0.85 +1.2 4,655,535 - ABID97_RS22480 0.85 -0.9 4,655,815 + ABID97_RS22485 0.17 +0.7 4,655,816 - ABID97_RS22485 0.17 -0.7 4,655,816 - ABID97_RS22485 0.17 +0.0 4,656,157 + ABID97_RS22485 0.46 +0.3 4,656,266 - ABID97_RS22485 0.55 +1.5 4,656,266 - ABID97_RS22485 0.55 -0.2 4,656,520 + ABID97_RS22485 0.76 +0.6 4,656,521 - ABID97_RS22485 0.76 -0.4 4,656,521 - ABID97_RS22485 0.76 -0.1 4,656,521 - ABID97_RS22485 0.76 +0.3 4,656,716 - +0.2 4,657,095 - ABID97_RS22490 0.34 +0.3 4,657,095 - ABID97_RS22490 0.34 -0.1 4,657,304 + ABID97_RS22490 0.60 +1.0 4,657,304 + ABID97_RS22490 0.60 -0.0 4,657,304 + ABID97_RS22490 0.60 -0.3 4,657,304 + ABID97_RS22490 0.60 -0.1 4,657,305 - ABID97_RS22490 0.60 -1.2 4,657,556 + +0.7 4,657,557 - -0.1 4,657,557 - -0.2 4,657,663 - +0.3 4,657,708 - +0.6
Or see this region's nucleotide sequence