Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS21865 and ABID97_RS21870 overlap by 4 nucleotides ABID97_RS21870 and ABID97_RS21875 are separated by 37 nucleotides ABID97_RS21875 and ABID97_RS21880 are separated by 47 nucleotides ABID97_RS21880 and ABID97_RS21885 overlap by 4 nucleotides
ABID97_RS21865: ABID97_RS21865 - sigma-70 family RNA polymerase sigma factor, at 4,525,036 to 4,525,623
_RS21865
ABID97_RS21870: ABID97_RS21870 - ChrR family anti-sigma-E factor, at 4,525,620 to 4,526,273
_RS21870
ABID97_RS21875: ABID97_RS21875 - DUF2177 family protein, at 4,526,311 to 4,526,727
_RS21875
ABID97_RS21880: ABID97_RS21880 - DUF6134 family protein, at 4,526,775 to 4,527,419
_RS21880
ABID97_RS21885: ABID97_RS21885 - DUF1295 domain-containing protein, at 4,527,416 to 4,528,222
_RS21885
Position (kb) 4526
4527 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4525.501 kb on + strand, within ABID97_RS21865 at 4526.088 kb on + strand, within ABID97_RS21870 at 4526.271 kb on + strand at 4526.271 kb on + strand at 4526.272 kb on - strand at 4526.272 kb on - strand at 4526.272 kb on - strand at 4526.450 kb on + strand, within ABID97_RS21875 at 4526.451 kb on - strand, within ABID97_RS21875 at 4526.459 kb on + strand, within ABID97_RS21875 at 4526.459 kb on + strand, within ABID97_RS21875 at 4526.459 kb on + strand, within ABID97_RS21875 at 4526.460 kb on - strand, within ABID97_RS21875 at 4526.558 kb on + strand, within ABID97_RS21875 at 4526.558 kb on + strand, within ABID97_RS21875 at 4526.559 kb on - strand, within ABID97_RS21875 at 4526.851 kb on + strand, within ABID97_RS21880 at 4526.851 kb on + strand, within ABID97_RS21880 at 4527.203 kb on - strand, within ABID97_RS21880 at 4527.471 kb on + strand at 4527.648 kb on + strand, within ABID97_RS21885 at 4527.648 kb on + strand, within ABID97_RS21885 at 4527.648 kb on + strand, within ABID97_RS21885 at 4527.649 kb on - strand, within ABID97_RS21885 at 4527.649 kb on - strand, within ABID97_RS21885 at 4527.667 kb on - strand, within ABID97_RS21885
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 4,525,501 + ABID97_RS21865 0.79 +0.8 4,526,088 + ABID97_RS21870 0.72 -1.3 4,526,271 + +0.2 4,526,271 + -0.5 4,526,272 - -2.5 4,526,272 - -0.3 4,526,272 - +0.7 4,526,450 + ABID97_RS21875 0.33 -0.3 4,526,451 - ABID97_RS21875 0.34 -0.1 4,526,459 + ABID97_RS21875 0.35 +0.0 4,526,459 + ABID97_RS21875 0.35 +1.2 4,526,459 + ABID97_RS21875 0.35 -0.5 4,526,460 - ABID97_RS21875 0.36 +0.0 4,526,558 + ABID97_RS21875 0.59 +0.4 4,526,558 + ABID97_RS21875 0.59 +2.4 4,526,559 - ABID97_RS21875 0.59 +1.8 4,526,851 + ABID97_RS21880 0.12 +0.1 4,526,851 + ABID97_RS21880 0.12 +0.0 4,527,203 - ABID97_RS21880 0.66 -0.3 4,527,471 + +0.1 4,527,648 + ABID97_RS21885 0.29 -0.5 4,527,648 + ABID97_RS21885 0.29 +0.5 4,527,648 + ABID97_RS21885 0.29 -0.3 4,527,649 - ABID97_RS21885 0.29 +0.5 4,527,649 - ABID97_RS21885 0.29 -0.1 4,527,667 - ABID97_RS21885 0.31 -0.4
Or see this region's nucleotide sequence