Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS21110 and ABID97_RS21115 are separated by 16 nucleotides ABID97_RS21115 and ABID97_RS21120 overlap by 17 nucleotides ABID97_RS21120 and ABID97_RS21125 are separated by 15 nucleotides
ABID97_RS21110: ABID97_RS21110 - amino acid ABC transporter permease, at 4,358,151 to 4,358,807
_RS21110
ABID97_RS21115: ABID97_RS21115 - amino acid ABC transporter permease, at 4,358,824 to 4,359,477
_RS21115
ABID97_RS21120: ABID97_RS21120 - amino acid ABC transporter ATP-binding protein, at 4,359,461 to 4,360,246
_RS21120
ABID97_RS21125: ABID97_RS21125 - DUF72 domain-containing protein, at 4,360,262 to 4,361,224
_RS21125
Position (kb) 4359
4360
4361 Strain fitness (log2 ratio) -1
0
1
2 at 4358.667 kb on + strand, within ABID97_RS21110 at 4358.736 kb on + strand, within ABID97_RS21110 at 4358.989 kb on + strand, within ABID97_RS21115 at 4358.990 kb on - strand, within ABID97_RS21115 at 4359.548 kb on + strand, within ABID97_RS21120 at 4360.264 kb on - strand at 4360.264 kb on - strand at 4360.422 kb on + strand, within ABID97_RS21125 at 4360.422 kb on + strand, within ABID97_RS21125 at 4360.422 kb on + strand, within ABID97_RS21125 at 4360.423 kb on - strand, within ABID97_RS21125 at 4360.590 kb on + strand, within ABID97_RS21125 at 4360.591 kb on - strand, within ABID97_RS21125 at 4360.870 kb on - strand, within ABID97_RS21125 at 4360.878 kb on + strand, within ABID97_RS21125 at 4360.995 kb on + strand, within ABID97_RS21125 at 4360.996 kb on - strand, within ABID97_RS21125 at 4360.996 kb on - strand, within ABID97_RS21125 at 4360.996 kb on - strand, within ABID97_RS21125 at 4361.079 kb on + strand, within ABID97_RS21125 at 4361.080 kb on - strand, within ABID97_RS21125 at 4361.234 kb on + strand at 4361.234 kb on + strand at 4361.234 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 4,358,667 + ABID97_RS21110 0.79 +0.4 4,358,736 + ABID97_RS21110 0.89 +0.9 4,358,989 + ABID97_RS21115 0.25 -0.1 4,358,990 - ABID97_RS21115 0.25 +0.3 4,359,548 + ABID97_RS21120 0.11 +0.4 4,360,264 - -1.2 4,360,264 - +0.0 4,360,422 + ABID97_RS21125 0.17 +0.4 4,360,422 + ABID97_RS21125 0.17 +0.3 4,360,422 + ABID97_RS21125 0.17 -0.3 4,360,423 - ABID97_RS21125 0.17 -1.7 4,360,590 + ABID97_RS21125 0.34 +0.3 4,360,591 - ABID97_RS21125 0.34 +0.4 4,360,870 - ABID97_RS21125 0.63 +1.9 4,360,878 + ABID97_RS21125 0.64 +0.7 4,360,995 + ABID97_RS21125 0.76 -0.1 4,360,996 - ABID97_RS21125 0.76 -0.1 4,360,996 - ABID97_RS21125 0.76 +0.6 4,360,996 - ABID97_RS21125 0.76 +0.5 4,361,079 + ABID97_RS21125 0.85 +1.3 4,361,080 - ABID97_RS21125 0.85 -0.5 4,361,234 + +0.3 4,361,234 + -0.0 4,361,234 + -1.2
Or see this region's nucleotide sequence