Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS20690 and ABID97_RS20695 are separated by 25 nucleotides ABID97_RS20695 and ABID97_RS20700 are separated by 106 nucleotides ABID97_RS20700 and ABID97_RS20705 are separated by 121 nucleotides
ABID97_RS20690: ABID97_RS20690 - fumarylacetoacetate hydrolase family protein, at 4,272,447 to 4,273,238
_RS20690
ABID97_RS20695: ABID97_RS20695 - metalloprotease PmbA, at 4,273,264 to 4,274,634
_RS20695
ABID97_RS20700: ABID97_RS20700 - ribosome biogenesis factor YjgA, at 4,274,741 to 4,275,397
_RS20700
ABID97_RS20705: ABID97_RS20705 - molybdopterin adenylyltransferase, at 4,275,519 to 4,276,109
_RS20705
Position (kb) 4273
4274
4275 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4272.265 kb on + strand at 4272.265 kb on + strand at 4272.350 kb on + strand at 4272.351 kb on - strand at 4272.622 kb on - strand, within ABID97_RS20690 at 4272.640 kb on - strand, within ABID97_RS20690 at 4272.777 kb on + strand, within ABID97_RS20690 at 4272.777 kb on + strand, within ABID97_RS20690 at 4272.777 kb on + strand, within ABID97_RS20690 at 4272.784 kb on - strand, within ABID97_RS20690 at 4272.858 kb on + strand, within ABID97_RS20690 at 4272.859 kb on - strand, within ABID97_RS20690 at 4272.859 kb on - strand, within ABID97_RS20690 at 4272.859 kb on - strand, within ABID97_RS20690 at 4273.003 kb on - strand, within ABID97_RS20690 at 4273.003 kb on - strand, within ABID97_RS20690 at 4273.140 kb on + strand, within ABID97_RS20690 at 4273.141 kb on - strand, within ABID97_RS20690 at 4273.326 kb on + strand at 4273.326 kb on + strand at 4273.327 kb on - strand at 4273.327 kb on - strand at 4273.329 kb on - strand at 4273.469 kb on + strand, within ABID97_RS20695 at 4273.469 kb on + strand, within ABID97_RS20695 at 4273.469 kb on + strand, within ABID97_RS20695 at 4273.634 kb on + strand, within ABID97_RS20695 at 4273.634 kb on + strand, within ABID97_RS20695 at 4273.635 kb on - strand, within ABID97_RS20695 at 4273.649 kb on + strand, within ABID97_RS20695 at 4273.649 kb on + strand, within ABID97_RS20695 at 4273.649 kb on + strand, within ABID97_RS20695 at 4273.955 kb on + strand, within ABID97_RS20695 at 4274.009 kb on + strand, within ABID97_RS20695 at 4274.010 kb on - strand, within ABID97_RS20695 at 4274.339 kb on + strand, within ABID97_RS20695 at 4274.339 kb on + strand, within ABID97_RS20695 at 4274.339 kb on + strand, within ABID97_RS20695 at 4274.417 kb on + strand, within ABID97_RS20695 at 4274.417 kb on + strand, within ABID97_RS20695 at 4274.417 kb on + strand, within ABID97_RS20695 at 4274.418 kb on - strand, within ABID97_RS20695 at 4274.418 kb on - strand, within ABID97_RS20695 at 4274.418 kb on - strand, within ABID97_RS20695 at 4274.595 kb on - strand at 4274.643 kb on + strand at 4274.643 kb on + strand at 4274.643 kb on + strand at 4274.648 kb on + strand at 4274.649 kb on - strand at 4274.649 kb on - strand at 4274.766 kb on - strand at 4275.585 kb on + strand, within ABID97_RS20705 at 4275.585 kb on + strand, within ABID97_RS20705 at 4275.585 kb on + strand, within ABID97_RS20705 at 4275.586 kb on - strand, within ABID97_RS20705 at 4275.586 kb on - strand, within ABID97_RS20705 at 4275.586 kb on - strand, within ABID97_RS20705 at 4275.586 kb on - strand, within ABID97_RS20705 at 4275.586 kb on - strand, within ABID97_RS20705 at 4275.586 kb on - strand, within ABID97_RS20705
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 4,272,265 + +1.1 4,272,265 + -0.0 4,272,350 + -0.2 4,272,351 - -0.8 4,272,622 - ABID97_RS20690 0.22 +1.1 4,272,640 - ABID97_RS20690 0.24 +0.8 4,272,777 + ABID97_RS20690 0.42 -0.4 4,272,777 + ABID97_RS20690 0.42 -0.2 4,272,777 + ABID97_RS20690 0.42 -0.5 4,272,784 - ABID97_RS20690 0.43 -0.2 4,272,858 + ABID97_RS20690 0.52 -1.4 4,272,859 - ABID97_RS20690 0.52 +0.1 4,272,859 - ABID97_RS20690 0.52 +1.8 4,272,859 - ABID97_RS20690 0.52 -2.2 4,273,003 - ABID97_RS20690 0.70 +0.9 4,273,003 - ABID97_RS20690 0.70 +0.2 4,273,140 + ABID97_RS20690 0.88 -1.5 4,273,141 - ABID97_RS20690 0.88 +1.1 4,273,326 + -0.9 4,273,326 + -0.2 4,273,327 - -0.2 4,273,327 - -0.3 4,273,329 - -0.7 4,273,469 + ABID97_RS20695 0.15 -2.2 4,273,469 + ABID97_RS20695 0.15 -0.7 4,273,469 + ABID97_RS20695 0.15 -0.6 4,273,634 + ABID97_RS20695 0.27 -0.3 4,273,634 + ABID97_RS20695 0.27 +0.5 4,273,635 - ABID97_RS20695 0.27 -0.6 4,273,649 + ABID97_RS20695 0.28 -0.6 4,273,649 + ABID97_RS20695 0.28 -1.8 4,273,649 + ABID97_RS20695 0.28 -0.5 4,273,955 + ABID97_RS20695 0.50 -0.2 4,274,009 + ABID97_RS20695 0.54 +0.5 4,274,010 - ABID97_RS20695 0.54 +0.1 4,274,339 + ABID97_RS20695 0.78 +0.3 4,274,339 + ABID97_RS20695 0.78 -0.1 4,274,339 + ABID97_RS20695 0.78 -0.9 4,274,417 + ABID97_RS20695 0.84 -1.2 4,274,417 + ABID97_RS20695 0.84 -0.4 4,274,417 + ABID97_RS20695 0.84 +0.1 4,274,418 - ABID97_RS20695 0.84 -0.4 4,274,418 - ABID97_RS20695 0.84 -0.4 4,274,418 - ABID97_RS20695 0.84 +0.8 4,274,595 - -0.6 4,274,643 + +0.1 4,274,643 + +0.5 4,274,643 + -0.1 4,274,648 + +0.6 4,274,649 - +0.4 4,274,649 - +0.1 4,274,766 - -2.6 4,275,585 + ABID97_RS20705 0.11 -0.3 4,275,585 + ABID97_RS20705 0.11 -1.9 4,275,585 + ABID97_RS20705 0.11 -3.6 4,275,586 - ABID97_RS20705 0.11 -1.9 4,275,586 - ABID97_RS20705 0.11 -1.3 4,275,586 - ABID97_RS20705 0.11 -2.4 4,275,586 - ABID97_RS20705 0.11 -2.4 4,275,586 - ABID97_RS20705 0.11 -2.7 4,275,586 - ABID97_RS20705 0.11 -3.1
Or see this region's nucleotide sequence