Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18025

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS18020 and ABID97_RS18025 are separated by 13 nucleotidesABID97_RS18025 and ABID97_RS18030 overlap by 1 nucleotidesABID97_RS18030 and ABID97_RS18035 are separated by 16 nucleotides ABID97_RS18020: ABID97_RS18020 - FAD-dependent oxidoreductase, at 3,723,083 to 3,724,171 _RS18020 ABID97_RS18025: ABID97_RS18025 - tRNA glutamyl-Q(34) synthetase GluQRS, at 3,724,185 to 3,725,108 _RS18025 ABID97_RS18030: ABID97_RS18030 - tRNA (guanosine(46)-N7)-methyltransferase TrmB, at 3,725,108 to 3,725,857 _RS18030 ABID97_RS18035: ABID97_RS18035 - PLP-dependent aminotransferase family protein, at 3,725,874 to 3,727,322 _RS18035 Position (kb) 3724 3725 3726Strain fitness (log2 ratio) -2 -1 0 1at 3723.308 kb on + strand, within ABID97_RS18020at 3723.614 kb on + strand, within ABID97_RS18020at 3724.762 kb on - strand, within ABID97_RS18025at 3724.891 kb on - strandat 3724.891 kb on - strand, within ABID97_RS18025at 3725.091 kb on + strandat 3725.092 kb on - strandat 3725.092 kb on - strandat 3725.107 kb on - strandat 3725.666 kb on + strand, within ABID97_RS18030at 3725.760 kb on - strand, within ABID97_RS18030at 3725.760 kb on - strand, within ABID97_RS18030

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
remove
3,723,308 + ABID97_RS18020 0.21 +0.3
3,723,614 + ABID97_RS18020 0.49 +0.1
3,724,762 - ABID97_RS18025 0.62 -0.6
3,724,891 - +1.1
3,724,891 - ABID97_RS18025 0.76 -0.5
3,725,091 + -0.1
3,725,092 - +0.5
3,725,092 - +0.8
3,725,107 - +0.8
3,725,666 + ABID97_RS18030 0.74 +0.1
3,725,760 - ABID97_RS18030 0.87 -2.0
3,725,760 - ABID97_RS18030 0.87 +0.1

Or see this region's nucleotide sequence