Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS17525 and ABID97_RS17530 are separated by 177 nucleotides ABID97_RS17530 and ABID97_RS17535 are separated by 13 nucleotides ABID97_RS17535 and ABID97_RS17540 are separated by 101 nucleotides ABID97_RS17540 and ABID97_RS17545 overlap by 7 nucleotides
ABID97_RS17525: ABID97_RS17525 - acetate--CoA ligase, at 3,619,460 to 3,621,457
_RS17525
ABID97_RS17530: ABID97_RS17530 - YqhA family protein, at 3,621,635 to 3,622,273
_RS17530
ABID97_RS17535: ABID97_RS17535 - LysR family transcriptional regulator, at 3,622,287 to 3,623,204
_RS17535
ABID97_RS17540: ABID97_RS17540 - NAD(P)-dependent oxidoreductase, at 3,623,306 to 3,623,923
_RS17540
ABID97_RS17545: ABID97_RS17545 - class II fumarate hydratase, at 3,623,917 to 3,625,314
_RS17545
Position (kb) 3622
3623
3624 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3621.562 kb on - strand at 3621.574 kb on + strand at 3621.602 kb on + strand at 3621.603 kb on - strand at 3621.603 kb on - strand at 3621.779 kb on + strand, within ABID97_RS17530 at 3621.779 kb on + strand, within ABID97_RS17530 at 3621.779 kb on + strand, within ABID97_RS17530 at 3621.780 kb on - strand, within ABID97_RS17530 at 3621.873 kb on - strand, within ABID97_RS17530 at 3621.873 kb on - strand, within ABID97_RS17530 at 3622.148 kb on + strand, within ABID97_RS17530 at 3622.148 kb on + strand, within ABID97_RS17530 at 3622.148 kb on + strand, within ABID97_RS17530 at 3622.148 kb on + strand, within ABID97_RS17530 at 3622.148 kb on + strand, within ABID97_RS17530 at 3622.148 kb on + strand, within ABID97_RS17530 at 3622.149 kb on - strand, within ABID97_RS17530 at 3622.149 kb on - strand, within ABID97_RS17530 at 3622.149 kb on - strand, within ABID97_RS17530 at 3622.221 kb on - strand at 3622.390 kb on + strand, within ABID97_RS17535 at 3622.390 kb on + strand, within ABID97_RS17535 at 3622.390 kb on + strand, within ABID97_RS17535 at 3622.390 kb on + strand, within ABID97_RS17535 at 3622.391 kb on - strand, within ABID97_RS17535 at 3622.391 kb on - strand, within ABID97_RS17535 at 3622.391 kb on - strand, within ABID97_RS17535 at 3622.391 kb on - strand, within ABID97_RS17535 at 3622.391 kb on - strand, within ABID97_RS17535 at 3622.391 kb on - strand, within ABID97_RS17535 at 3622.693 kb on + strand, within ABID97_RS17535 at 3622.694 kb on - strand, within ABID97_RS17535 at 3622.852 kb on + strand, within ABID97_RS17535 at 3622.865 kb on - strand, within ABID97_RS17535 at 3622.865 kb on - strand, within ABID97_RS17535 at 3623.098 kb on + strand, within ABID97_RS17535 at 3623.099 kb on - strand, within ABID97_RS17535 at 3623.099 kb on - strand, within ABID97_RS17535 at 3623.099 kb on - strand, within ABID97_RS17535 at 3623.099 kb on - strand, within ABID97_RS17535 at 3623.099 kb on - strand, within ABID97_RS17535 at 3623.099 kb on - strand, within ABID97_RS17535 at 3623.667 kb on - strand, within ABID97_RS17540 at 3623.852 kb on + strand, within ABID97_RS17540 at 3623.853 kb on - strand, within ABID97_RS17540 at 3623.907 kb on - strand at 3623.907 kb on - strand at 3624.038 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 3,621,562 - +0.6 3,621,574 + +0.8 3,621,602 + +0.4 3,621,603 - +0.1 3,621,603 - -0.5 3,621,779 + ABID97_RS17530 0.23 -0.6 3,621,779 + ABID97_RS17530 0.23 +1.8 3,621,779 + ABID97_RS17530 0.23 +0.1 3,621,780 - ABID97_RS17530 0.23 +0.0 3,621,873 - ABID97_RS17530 0.37 -1.9 3,621,873 - ABID97_RS17530 0.37 +0.4 3,622,148 + ABID97_RS17530 0.80 -0.6 3,622,148 + ABID97_RS17530 0.80 -0.6 3,622,148 + ABID97_RS17530 0.80 -0.2 3,622,148 + ABID97_RS17530 0.80 -0.2 3,622,148 + ABID97_RS17530 0.80 +0.2 3,622,148 + ABID97_RS17530 0.80 -0.1 3,622,149 - ABID97_RS17530 0.80 +0.2 3,622,149 - ABID97_RS17530 0.80 -0.9 3,622,149 - ABID97_RS17530 0.80 -0.5 3,622,221 - -0.5 3,622,390 + ABID97_RS17535 0.11 -0.0 3,622,390 + ABID97_RS17535 0.11 +0.8 3,622,390 + ABID97_RS17535 0.11 +0.7 3,622,390 + ABID97_RS17535 0.11 +0.7 3,622,391 - ABID97_RS17535 0.11 +0.1 3,622,391 - ABID97_RS17535 0.11 +0.3 3,622,391 - ABID97_RS17535 0.11 +1.0 3,622,391 - ABID97_RS17535 0.11 +0.2 3,622,391 - ABID97_RS17535 0.11 -0.4 3,622,391 - ABID97_RS17535 0.11 +0.8 3,622,693 + ABID97_RS17535 0.44 +0.8 3,622,694 - ABID97_RS17535 0.44 +1.2 3,622,852 + ABID97_RS17535 0.62 +0.3 3,622,865 - ABID97_RS17535 0.63 -1.7 3,622,865 - ABID97_RS17535 0.63 +0.3 3,623,098 + ABID97_RS17535 0.88 -0.8 3,623,099 - ABID97_RS17535 0.88 +0.0 3,623,099 - ABID97_RS17535 0.88 +0.3 3,623,099 - ABID97_RS17535 0.88 -0.1 3,623,099 - ABID97_RS17535 0.88 +0.9 3,623,099 - ABID97_RS17535 0.88 +0.6 3,623,099 - ABID97_RS17535 0.88 -0.3 3,623,667 - ABID97_RS17540 0.58 -0.5 3,623,852 + ABID97_RS17540 0.88 -0.1 3,623,853 - ABID97_RS17540 0.89 -0.9 3,623,907 - -0.0 3,623,907 - +0.3 3,624,038 + +0.5
Or see this region's nucleotide sequence