Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS16025 and ABID97_RS16030 are separated by 81 nucleotides ABID97_RS16030 and ABID97_RS16035 are separated by 67 nucleotides ABID97_RS16035 and ABID97_RS16040 are separated by 26 nucleotides
ABID97_RS16025: ABID97_RS16025 - nitrite reductase small subunit NirD, at 3,320,414 to 3,320,824
_RS16025
ABID97_RS16030: ABID97_RS16030 - uroporphyrinogen-III C-methyltransferase, at 3,320,906 to 3,321,676
_RS16030
ABID97_RS16035: ABID97_RS16035 - formate/nitrite transporter family protein, at 3,321,744 to 3,322,556
_RS16035
ABID97_RS16040: ABID97_RS16040 - protein kinase, at 3,322,583 to 3,324,316
_RS16040
Position (kb) 3321
3322
3323 Strain fitness (log2 ratio) -1
0
1 at 3321.422 kb on + strand, within ABID97_RS16030 at 3321.423 kb on - strand, within ABID97_RS16030 at 3321.750 kb on + strand at 3321.955 kb on - strand, within ABID97_RS16035 at 3322.438 kb on - strand, within ABID97_RS16035 at 3322.788 kb on - strand, within ABID97_RS16040 at 3322.791 kb on - strand, within ABID97_RS16040 at 3322.791 kb on - strand, within ABID97_RS16040 at 3322.791 kb on - strand, within ABID97_RS16040 at 3323.057 kb on + strand, within ABID97_RS16040 at 3323.399 kb on - strand, within ABID97_RS16040 at 3323.442 kb on - strand, within ABID97_RS16040
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 3,321,422 + ABID97_RS16030 0.67 +0.2 3,321,423 - ABID97_RS16030 0.67 -0.6 3,321,750 + -0.4 3,321,955 - ABID97_RS16035 0.26 +0.5 3,322,438 - ABID97_RS16035 0.85 +0.4 3,322,788 - ABID97_RS16040 0.12 -0.1 3,322,791 - ABID97_RS16040 0.12 +0.2 3,322,791 - ABID97_RS16040 0.12 -1.2 3,322,791 - ABID97_RS16040 0.12 +0.1 3,323,057 + ABID97_RS16040 0.27 -0.1 3,323,399 - ABID97_RS16040 0.47 -0.2 3,323,442 - ABID97_RS16040 0.50 -0.9
Or see this region's nucleotide sequence