Strain Fitness in Variovorax sp. OAS795 around ABID97_RS15985

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS15980 and ABID97_RS15985 overlap by 4 nucleotidesABID97_RS15985 and ABID97_RS15990 overlap by 4 nucleotides ABID97_RS15980: ABID97_RS15980 - endolytic transglycosylase MltG, at 3,310,780 to 3,311,817 _RS15980 ABID97_RS15985: ABID97_RS15985 - dTMP kinase, at 3,311,814 to 3,312,488 _RS15985 ABID97_RS15990: ABID97_RS15990 - DNA polymerase III subunit delta', at 3,312,485 to 3,313,507 _RS15990 Position (kb) 3311 3312 3313Strain fitness (log2 ratio) -3 -2 -1 0 1at 3310.985 kb on + strand, within ABID97_RS15980at 3310.985 kb on + strand, within ABID97_RS15980at 3310.985 kb on + strand, within ABID97_RS15980at 3310.985 kb on + strand, within ABID97_RS15980at 3310.986 kb on - strand, within ABID97_RS15980at 3310.986 kb on - strand, within ABID97_RS15980

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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3,310,985 + ABID97_RS15980 0.20 +0.3
3,310,985 + ABID97_RS15980 0.20 -3.3
3,310,985 + ABID97_RS15980 0.20 -0.5
3,310,985 + ABID97_RS15980 0.20 +0.3
3,310,986 - ABID97_RS15980 0.20 -0.6
3,310,986 - ABID97_RS15980 0.20 +1.1

Or see this region's nucleotide sequence