Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS08635 and ABID97_RS08640 are separated by 161 nucleotides ABID97_RS08640 and ABID97_RS08645 are separated by 133 nucleotides ABID97_RS08645 and ABID97_RS08650 are separated by 105 nucleotides
ABID97_RS08635: ABID97_RS08635 - aspartate aminotransferase family protein, at 1,813,805 to 1,815,013
_RS08635
ABID97_RS08640: ABID97_RS08640 - DUF3579 domain-containing protein, at 1,815,175 to 1,815,507
_RS08640
ABID97_RS08645: ABID97_RS08645 - 30S ribosomal protein S20, at 1,815,641 to 1,815,955
_RS08645
ABID97_RS08650: ABID97_RS08650 - murein biosynthesis integral membrane protein MurJ, at 1,816,061 to 1,817,614
_RS08650
Position (kb) 1815
1816 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1815.045 kb on + strand at 1815.125 kb on + strand at 1815.126 kb on - strand at 1815.301 kb on + strand, within ABID97_RS08640 at 1815.323 kb on - strand, within ABID97_RS08640 at 1815.323 kb on - strand, within ABID97_RS08640 at 1815.569 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 1,815,045 + -0.3 1,815,125 + -1.3 1,815,126 - +0.1 1,815,301 + ABID97_RS08640 0.38 -2.3 1,815,323 - ABID97_RS08640 0.44 -3.0 1,815,323 - ABID97_RS08640 0.44 -2.1 1,815,569 + -0.2
Or see this region's nucleotide sequence