Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08415

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08405 and ABID97_RS08410 are separated by 121 nucleotidesABID97_RS08410 and ABID97_RS08415 are separated by 49 nucleotidesABID97_RS08415 and ABID97_RS08420 are separated by 22 nucleotidesABID97_RS08420 and ABID97_RS08425 are separated by 66 nucleotides ABID97_RS08405: ABID97_RS08405 - lysine--tRNA ligase, at 1,764,918 to 1,766,480 _RS08405 ABID97_RS08410: ABID97_RS08410 - LON peptidase substrate-binding domain-containing protein, at 1,766,602 to 1,767,249 _RS08410 ABID97_RS08415: ABID97_RS08415 - YggT family protein, at 1,767,299 to 1,767,856 _RS08415 ABID97_RS08420: ABID97_RS08420 - acetyl-CoA carboxylase, carboxyltransferase subunit beta, at 1,767,879 to 1,768,751 _RS08420 ABID97_RS08425: ABID97_RS08425 - tryptophan synthase subunit alpha, at 1,768,818 to 1,769,663 _RS08425 Position (kb) 1767 1768Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1766.756 kb on + strand, within ABID97_RS08410at 1766.756 kb on + strand, within ABID97_RS08410at 1766.757 kb on - strand, within ABID97_RS08410at 1766.757 kb on - strand, within ABID97_RS08410at 1766.757 kb on - strand, within ABID97_RS08410at 1766.757 kb on - strand, within ABID97_RS08410at 1766.757 kb on - strand, within ABID97_RS08410at 1767.149 kb on + strand, within ABID97_RS08410at 1767.149 kb on + strand, within ABID97_RS08410at 1767.150 kb on - strand, within ABID97_RS08410at 1767.150 kb on - strand, within ABID97_RS08410at 1767.154 kb on + strand, within ABID97_RS08410at 1767.154 kb on + strand, within ABID97_RS08410at 1767.155 kb on - strand, within ABID97_RS08410at 1767.166 kb on - strand, within ABID97_RS08410at 1767.268 kb on + strandat 1767.269 kb on - strandat 1767.269 kb on - strandat 1767.269 kb on - strandat 1767.374 kb on + strand, within ABID97_RS08415at 1767.374 kb on + strand, within ABID97_RS08415at 1767.375 kb on - strand, within ABID97_RS08415at 1767.375 kb on - strand, within ABID97_RS08415at 1767.375 kb on - strand, within ABID97_RS08415at 1767.375 kb on - strand, within ABID97_RS08415at 1767.375 kb on - strand, within ABID97_RS08415at 1767.383 kb on + strand, within ABID97_RS08415at 1767.383 kb on + strand, within ABID97_RS08415at 1767.384 kb on - strand, within ABID97_RS08415at 1767.650 kb on + strand, within ABID97_RS08415at 1767.650 kb on + strand, within ABID97_RS08415at 1767.651 kb on - strand, within ABID97_RS08415at 1767.651 kb on - strand, within ABID97_RS08415at 1768.752 kb on - strandat 1768.766 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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1,766,756 + ABID97_RS08410 0.24 +0.5
1,766,756 + ABID97_RS08410 0.24 -1.0
1,766,757 - ABID97_RS08410 0.24 +1.0
1,766,757 - ABID97_RS08410 0.24 +2.7
1,766,757 - ABID97_RS08410 0.24 -0.9
1,766,757 - ABID97_RS08410 0.24 -0.5
1,766,757 - ABID97_RS08410 0.24 +3.1
1,767,149 + ABID97_RS08410 0.84 -0.7
1,767,149 + ABID97_RS08410 0.84 -1.4
1,767,150 - ABID97_RS08410 0.85 -0.2
1,767,150 - ABID97_RS08410 0.85 -0.0
1,767,154 + ABID97_RS08410 0.85 -0.2
1,767,154 + ABID97_RS08410 0.85 +0.7
1,767,155 - ABID97_RS08410 0.85 +1.1
1,767,166 - ABID97_RS08410 0.87 +0.0
1,767,268 + -0.6
1,767,269 - -1.3
1,767,269 - -1.5
1,767,269 - -1.2
1,767,374 + ABID97_RS08415 0.13 +0.1
1,767,374 + ABID97_RS08415 0.13 -1.1
1,767,375 - ABID97_RS08415 0.14 -0.0
1,767,375 - ABID97_RS08415 0.14 -1.7
1,767,375 - ABID97_RS08415 0.14 +0.2
1,767,375 - ABID97_RS08415 0.14 -0.3
1,767,375 - ABID97_RS08415 0.14 -0.0
1,767,383 + ABID97_RS08415 0.15 -2.2
1,767,383 + ABID97_RS08415 0.15 +0.1
1,767,384 - ABID97_RS08415 0.15 -0.5
1,767,650 + ABID97_RS08415 0.63 -0.9
1,767,650 + ABID97_RS08415 0.63 +0.1
1,767,651 - ABID97_RS08415 0.63 +0.0
1,767,651 - ABID97_RS08415 0.63 -0.3
1,768,752 - -1.5
1,768,766 - -0.6

Or see this region's nucleotide sequence