Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04575 and ABID97_RS04580 overlap by 8 nucleotides ABID97_RS04580 and ABID97_RS04585 are separated by 123 nucleotides
ABID97_RS04575: ABID97_RS04575 - NAD/NADP octopine/nopaline dehydrogenase family protein, at 951,250 to 952,329
_RS04575
ABID97_RS04580: ABID97_RS04580 - tripartite tricarboxylate transporter substrate binding protein, at 952,322 to 953,299
_RS04580
ABID97_RS04585: ABID97_RS04585 - leucine--tRNA ligase, at 953,423 to 956,053
_RS04585
Position (kb) 952
953
954 Strain fitness (log2 ratio) -1
0
1 at 951.428 kb on + strand, within ABID97_RS04575 at 951.450 kb on - strand, within ABID97_RS04575 at 951.662 kb on + strand, within ABID97_RS04575 at 951.663 kb on - strand, within ABID97_RS04575 at 951.663 kb on - strand, within ABID97_RS04575 at 951.971 kb on + strand, within ABID97_RS04575 at 951.972 kb on - strand, within ABID97_RS04575 at 951.977 kb on + strand, within ABID97_RS04575 at 951.977 kb on + strand, within ABID97_RS04575 at 951.977 kb on + strand, within ABID97_RS04575 at 951.978 kb on - strand, within ABID97_RS04575 at 952.833 kb on + strand, within ABID97_RS04580 at 952.834 kb on - strand, within ABID97_RS04580 at 952.834 kb on - strand, within ABID97_RS04580 at 953.364 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 951,428 + ABID97_RS04575 0.16 -0.1 951,450 - ABID97_RS04575 0.19 +0.7 951,662 + ABID97_RS04575 0.38 +0.2 951,663 - ABID97_RS04575 0.38 +0.2 951,663 - ABID97_RS04575 0.38 +0.7 951,971 + ABID97_RS04575 0.67 +0.3 951,972 - ABID97_RS04575 0.67 +0.0 951,977 + ABID97_RS04575 0.67 -0.8 951,977 + ABID97_RS04575 0.67 -0.4 951,977 + ABID97_RS04575 0.67 -0.1 951,978 - ABID97_RS04575 0.67 +0.7 952,833 + ABID97_RS04580 0.52 +0.4 952,834 - ABID97_RS04580 0.52 +1.2 952,834 - ABID97_RS04580 0.52 +0.5 953,364 - -1.1
Or see this region's nucleotide sequence