Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04070 and ABID97_RS04075 are separated by 97 nucleotides ABID97_RS04075 and ABID97_RS04080 overlap by 4 nucleotides ABID97_RS04080 and ABID97_RS04085 are separated by 28 nucleotides
ABID97_RS04070: ABID97_RS04070 - aldehyde dehydrogenase family protein, at 834,450 to 835,988
_RS04070
ABID97_RS04075: ABID97_RS04075 - amino acid ABC transporter substrate-binding protein, at 836,086 to 836,988
_RS04075
ABID97_RS04080: ABID97_RS04080 - pyridoxal phosphate-dependent aminotransferase, at 836,985 to 838,229
_RS04080
ABID97_RS04085: ABID97_RS04085 - thiamine pyrophosphate-binding protein, at 838,258 to 839,931
_RS04085
Position (kb) 836
837
838
839 Strain fitness (log2 ratio) -2
-1
0
1 at 836.242 kb on + strand, within ABID97_RS04075 at 836.242 kb on + strand, within ABID97_RS04075 at 836.242 kb on + strand, within ABID97_RS04075 at 836.242 kb on + strand, within ABID97_RS04075 at 836.243 kb on - strand, within ABID97_RS04075 at 836.266 kb on + strand, within ABID97_RS04075 at 836.266 kb on + strand, within ABID97_RS04075 at 836.267 kb on - strand, within ABID97_RS04075 at 836.335 kb on + strand, within ABID97_RS04075 at 836.336 kb on - strand, within ABID97_RS04075 at 836.336 kb on - strand, within ABID97_RS04075 at 836.336 kb on - strand, within ABID97_RS04075 at 836.458 kb on + strand, within ABID97_RS04075 at 836.458 kb on + strand, within ABID97_RS04075 at 836.458 kb on + strand, within ABID97_RS04075 at 836.459 kb on - strand, within ABID97_RS04075 at 836.459 kb on - strand, within ABID97_RS04075 at 836.731 kb on + strand, within ABID97_RS04075 at 836.863 kb on + strand, within ABID97_RS04075 at 836.863 kb on + strand, within ABID97_RS04075 at 836.864 kb on - strand, within ABID97_RS04075 at 837.216 kb on + strand, within ABID97_RS04080 at 837.396 kb on + strand, within ABID97_RS04080 at 837.397 kb on - strand, within ABID97_RS04080 at 837.408 kb on + strand, within ABID97_RS04080 at 837.646 kb on - strand, within ABID97_RS04080 at 837.661 kb on - strand, within ABID97_RS04080 at 837.999 kb on + strand, within ABID97_RS04080 at 837.999 kb on + strand, within ABID97_RS04080 at 838.000 kb on - strand, within ABID97_RS04080 at 838.000 kb on - strand, within ABID97_RS04080 at 838.000 kb on - strand, within ABID97_RS04080 at 838.000 kb on - strand, within ABID97_RS04080 at 838.001 kb on + strand, within ABID97_RS04080 at 838.001 kb on + strand, within ABID97_RS04080 at 838.001 kb on + strand, within ABID97_RS04080 at 838.001 kb on + strand, within ABID97_RS04080 at 838.397 kb on + strand at 838.397 kb on + strand at 838.808 kb on - strand, within ABID97_RS04085 at 838.952 kb on - strand, within ABID97_RS04085 at 838.999 kb on + strand, within ABID97_RS04085 at 839.000 kb on - strand, within ABID97_RS04085 at 839.111 kb on - strand, within ABID97_RS04085
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 836,242 + ABID97_RS04075 0.17 -0.5 836,242 + ABID97_RS04075 0.17 +0.3 836,242 + ABID97_RS04075 0.17 +0.7 836,242 + ABID97_RS04075 0.17 -0.2 836,243 - ABID97_RS04075 0.17 -1.6 836,266 + ABID97_RS04075 0.20 +0.1 836,266 + ABID97_RS04075 0.20 +1.0 836,267 - ABID97_RS04075 0.20 -0.7 836,335 + ABID97_RS04075 0.28 -0.1 836,336 - ABID97_RS04075 0.28 +0.3 836,336 - ABID97_RS04075 0.28 +0.5 836,336 - ABID97_RS04075 0.28 +0.7 836,458 + ABID97_RS04075 0.41 +1.2 836,458 + ABID97_RS04075 0.41 -0.4 836,458 + ABID97_RS04075 0.41 +0.3 836,459 - ABID97_RS04075 0.41 +0.1 836,459 - ABID97_RS04075 0.41 +0.2 836,731 + ABID97_RS04075 0.71 +0.5 836,863 + ABID97_RS04075 0.86 +0.0 836,863 + ABID97_RS04075 0.86 -0.0 836,864 - ABID97_RS04075 0.86 +0.2 837,216 + ABID97_RS04080 0.19 +0.2 837,396 + ABID97_RS04080 0.33 +1.2 837,397 - ABID97_RS04080 0.33 -0.3 837,408 + ABID97_RS04080 0.34 -2.6 837,646 - ABID97_RS04080 0.53 -1.2 837,661 - ABID97_RS04080 0.54 -0.0 837,999 + ABID97_RS04080 0.81 +0.3 837,999 + ABID97_RS04080 0.81 -0.5 838,000 - ABID97_RS04080 0.82 +0.0 838,000 - ABID97_RS04080 0.82 +0.5 838,000 - ABID97_RS04080 0.82 -0.5 838,000 - ABID97_RS04080 0.82 -2.3 838,001 + ABID97_RS04080 0.82 -0.2 838,001 + ABID97_RS04080 0.82 -0.2 838,001 + ABID97_RS04080 0.82 -0.7 838,001 + ABID97_RS04080 0.82 -0.6 838,397 + +0.2 838,397 + -0.2 838,808 - ABID97_RS04085 0.33 +0.4 838,952 - ABID97_RS04085 0.41 +1.0 838,999 + ABID97_RS04085 0.44 +0.3 839,000 - ABID97_RS04085 0.44 +0.1 839,111 - ABID97_RS04085 0.51 -0.8
Or see this region's nucleotide sequence