Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03985 and ABID97_RS03990 are separated by 13 nucleotides ABID97_RS03990 and ABID97_RS03995 are separated by 50 nucleotides ABID97_RS03995 and ABID97_RS04000 are separated by 14 nucleotides ABID97_RS04000 and ABID97_RS04005 are separated by 14 nucleotides ABID97_RS04005 and ABID97_RS04010 overlap by 4 nucleotides
ABID97_RS03985: ABID97_RS03985 - hypothetical protein, at 817,806 to 818,870
_RS03985
ABID97_RS03990: ABID97_RS03990 - hypothetical protein, at 818,884 to 819,105
_RS03990
ABID97_RS03995: ABID97_RS03995 - ABC-type transport auxiliary lipoprotein family protein, at 819,156 to 819,827
_RS03995
ABID97_RS04000: ABID97_RS04000 - MlaD family protein, at 819,842 to 820,813
_RS04000
ABID97_RS04005: ABID97_RS04005 - ATP-binding cassette domain-containing protein, at 820,828 to 821,640
_RS04005
ABID97_RS04010: ABID97_RS04010 - ABC transporter permease, at 821,637 to 822,803
_RS04010
Position (kb) 819
820
821 Strain fitness (log2 ratio) -1
0
1
2 at 819.709 kb on + strand, within ABID97_RS03995 at 819.709 kb on + strand, within ABID97_RS03995 at 820.515 kb on + strand, within ABID97_RS04000 at 820.515 kb on + strand, within ABID97_RS04000 at 820.701 kb on + strand, within ABID97_RS04000 at 820.701 kb on + strand, within ABID97_RS04000 at 820.701 kb on + strand, within ABID97_RS04000 at 820.701 kb on + strand, within ABID97_RS04000 at 820.702 kb on - strand, within ABID97_RS04000 at 820.920 kb on - strand, within ABID97_RS04005 at 821.776 kb on + strand, within ABID97_RS04010 at 821.777 kb on - strand, within ABID97_RS04010
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 819,709 + ABID97_RS03995 0.82 +1.5 819,709 + ABID97_RS03995 0.82 +1.8 820,515 + ABID97_RS04000 0.69 +1.2 820,515 + ABID97_RS04000 0.69 +2.6 820,701 + ABID97_RS04000 0.88 +1.0 820,701 + ABID97_RS04000 0.88 +0.6 820,701 + ABID97_RS04000 0.88 +0.6 820,701 + ABID97_RS04000 0.88 +0.7 820,702 - ABID97_RS04000 0.88 +0.6 820,920 - ABID97_RS04005 0.11 +0.5 821,776 + ABID97_RS04010 0.12 +0.6 821,777 - ABID97_RS04010 0.12 +1.7
Or see this region's nucleotide sequence