Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03750 and ABID97_RS03755 are separated by 43 nucleotides ABID97_RS03755 and ABID97_RS03760 overlap by 4 nucleotides ABID97_RS03760 and ABID97_RS03765 overlap by 4 nucleotides
ABID97_RS03750: ABID97_RS03750 - tripartite tricarboxylate transporter substrate binding protein, at 770,252 to 771,241
_RS03750
ABID97_RS03755: ABID97_RS03755 - fumarylacetoacetate hydrolase family protein, at 771,285 to 772,055
_RS03755
ABID97_RS03760: ABID97_RS03760 - fumarylacetoacetate hydrolase family protein, at 772,052 to 772,693
_RS03760
ABID97_RS03765: ABID97_RS03765 - homoprotocatechuate degradation operon regulator HpaR, at 772,690 to 773,124
_RS03765
Position (kb) 771
772
773 Strain fitness (log2 ratio) -1
0
1 at 770.478 kb on + strand, within ABID97_RS03750 at 770.478 kb on + strand, within ABID97_RS03750 at 770.497 kb on - strand, within ABID97_RS03750 at 770.674 kb on - strand, within ABID97_RS03750 at 770.674 kb on - strand, within ABID97_RS03750 at 770.766 kb on + strand, within ABID97_RS03750 at 770.766 kb on + strand, within ABID97_RS03750 at 770.767 kb on - strand, within ABID97_RS03750 at 770.767 kb on - strand, within ABID97_RS03750 at 770.913 kb on + strand, within ABID97_RS03750 at 770.913 kb on + strand, within ABID97_RS03750 at 770.928 kb on + strand, within ABID97_RS03750 at 770.929 kb on - strand, within ABID97_RS03750 at 771.430 kb on + strand, within ABID97_RS03755 at 771.431 kb on - strand, within ABID97_RS03755 at 771.626 kb on - strand, within ABID97_RS03755 at 771.640 kb on + strand, within ABID97_RS03755 at 771.676 kb on + strand, within ABID97_RS03755 at 771.677 kb on - strand, within ABID97_RS03755 at 771.740 kb on - strand, within ABID97_RS03755 at 771.740 kb on - strand, within ABID97_RS03755 at 771.869 kb on - strand, within ABID97_RS03755 at 771.869 kb on - strand, within ABID97_RS03755 at 772.033 kb on + strand at 772.033 kb on + strand at 772.033 kb on + strand at 772.033 kb on + strand at 772.033 kb on + strand at 772.034 kb on - strand at 772.340 kb on + strand, within ABID97_RS03760 at 772.554 kb on + strand, within ABID97_RS03760 at 772.555 kb on - strand, within ABID97_RS03760 at 772.585 kb on - strand, within ABID97_RS03760 at 772.781 kb on + strand, within ABID97_RS03765 at 772.781 kb on + strand, within ABID97_RS03765 at 772.782 kb on - strand, within ABID97_RS03765
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 770,478 + ABID97_RS03750 0.23 -0.1 770,478 + ABID97_RS03750 0.23 +0.1 770,497 - ABID97_RS03750 0.25 +0.2 770,674 - ABID97_RS03750 0.43 -0.8 770,674 - ABID97_RS03750 0.43 +0.3 770,766 + ABID97_RS03750 0.52 +1.0 770,766 + ABID97_RS03750 0.52 +0.1 770,767 - ABID97_RS03750 0.52 -0.2 770,767 - ABID97_RS03750 0.52 +0.4 770,913 + ABID97_RS03750 0.67 +0.2 770,913 + ABID97_RS03750 0.67 -0.3 770,928 + ABID97_RS03750 0.68 -1.3 770,929 - ABID97_RS03750 0.68 -0.0 771,430 + ABID97_RS03755 0.19 +0.9 771,431 - ABID97_RS03755 0.19 +1.2 771,626 - ABID97_RS03755 0.44 -0.3 771,640 + ABID97_RS03755 0.46 +0.2 771,676 + ABID97_RS03755 0.51 -0.0 771,677 - ABID97_RS03755 0.51 +0.2 771,740 - ABID97_RS03755 0.59 +0.0 771,740 - ABID97_RS03755 0.59 +0.5 771,869 - ABID97_RS03755 0.76 +1.3 771,869 - ABID97_RS03755 0.76 +0.5 772,033 + +0.1 772,033 + -0.9 772,033 + -0.3 772,033 + -1.1 772,033 + +0.2 772,034 - +0.3 772,340 + ABID97_RS03760 0.45 -0.3 772,554 + ABID97_RS03760 0.78 +0.7 772,555 - ABID97_RS03760 0.78 +1.1 772,585 - ABID97_RS03760 0.83 +0.7 772,781 + ABID97_RS03765 0.21 -0.4 772,781 + ABID97_RS03765 0.21 +0.1 772,782 - ABID97_RS03765 0.21 -0.2
Or see this region's nucleotide sequence