Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03515 and ABID97_RS03520 are separated by 34 nucleotides ABID97_RS03520 and ABID97_RS03525 are separated by 73 nucleotides ABID97_RS03525 and ABID97_RS03530 are separated by 27 nucleotides
ABID97_RS03515: ABID97_RS03515 - amino acid synthesis family protein, at 717,087 to 717,728
_RS03515
ABID97_RS03520: ABID97_RS03520 - amino acid synthesis family protein, at 717,763 to 718,347
_RS03520
ABID97_RS03525: ABID97_RS03525 - ABC transporter substrate-binding protein, at 718,421 to 719,626
_RS03525
ABID97_RS03530: ABID97_RS03530 - ABC transporter permease, at 719,654 to 721,576
_RS03530
Position (kb) 718
719
720 Strain fitness (log2 ratio) -2
-1
0
1
2 at 717.438 kb on + strand, within ABID97_RS03515 at 717.567 kb on + strand, within ABID97_RS03515 at 717.567 kb on + strand, within ABID97_RS03515 at 717.567 kb on + strand, within ABID97_RS03515 at 717.567 kb on + strand, within ABID97_RS03515 at 717.568 kb on - strand, within ABID97_RS03515 at 717.568 kb on - strand, within ABID97_RS03515 at 717.568 kb on - strand, within ABID97_RS03515 at 717.568 kb on - strand, within ABID97_RS03515 at 718.388 kb on + strand at 718.388 kb on + strand at 718.389 kb on - strand at 718.389 kb on - strand at 718.529 kb on + strand at 718.529 kb on + strand at 718.529 kb on + strand at 718.529 kb on + strand at 718.529 kb on + strand at 718.529 kb on + strand at 718.530 kb on - strand at 718.559 kb on + strand, within ABID97_RS03525 at 718.838 kb on + strand, within ABID97_RS03525 at 718.838 kb on + strand, within ABID97_RS03525 at 718.838 kb on + strand, within ABID97_RS03525 at 718.865 kb on + strand, within ABID97_RS03525 at 718.865 kb on + strand, within ABID97_RS03525 at 718.865 kb on + strand, within ABID97_RS03525 at 718.865 kb on + strand, within ABID97_RS03525 at 718.865 kb on + strand, within ABID97_RS03525 at 718.866 kb on - strand, within ABID97_RS03525 at 718.866 kb on - strand, within ABID97_RS03525 at 718.941 kb on - strand, within ABID97_RS03525 at 718.941 kb on - strand, within ABID97_RS03525 at 718.941 kb on - strand, within ABID97_RS03525 at 718.941 kb on - strand, within ABID97_RS03525 at 718.947 kb on - strand, within ABID97_RS03525 at 719.204 kb on + strand, within ABID97_RS03525 at 719.265 kb on - strand, within ABID97_RS03525 at 719.306 kb on + strand, within ABID97_RS03525 at 719.319 kb on - strand, within ABID97_RS03525 at 719.319 kb on - strand, within ABID97_RS03525 at 719.354 kb on + strand, within ABID97_RS03525 at 719.555 kb on + strand at 719.555 kb on + strand at 719.561 kb on + strand at 719.561 kb on + strand at 719.562 kb on - strand at 719.797 kb on + strand at 719.801 kb on + strand at 719.924 kb on + strand, within ABID97_RS03530 at 719.924 kb on + strand, within ABID97_RS03530 at 719.925 kb on - strand, within ABID97_RS03530 at 719.996 kb on + strand, within ABID97_RS03530 at 720.083 kb on + strand, within ABID97_RS03530 at 720.084 kb on - strand, within ABID97_RS03530 at 720.614 kb on + strand, within ABID97_RS03530 at 720.615 kb on - strand, within ABID97_RS03530
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 717,438 + ABID97_RS03515 0.55 -1.2 717,567 + ABID97_RS03515 0.75 -0.9 717,567 + ABID97_RS03515 0.75 -0.3 717,567 + ABID97_RS03515 0.75 -0.4 717,567 + ABID97_RS03515 0.75 -0.5 717,568 - ABID97_RS03515 0.75 +0.1 717,568 - ABID97_RS03515 0.75 -0.8 717,568 - ABID97_RS03515 0.75 -0.8 717,568 - ABID97_RS03515 0.75 -0.6 718,388 + +1.2 718,388 + +2.3 718,389 - +1.0 718,389 - +0.8 718,529 + +0.3 718,529 + +1.6 718,529 + +0.5 718,529 + -0.1 718,529 + -0.2 718,529 + +0.2 718,530 - +0.1 718,559 + ABID97_RS03525 0.11 -0.1 718,838 + ABID97_RS03525 0.35 -0.5 718,838 + ABID97_RS03525 0.35 +0.3 718,838 + ABID97_RS03525 0.35 +2.4 718,865 + ABID97_RS03525 0.37 +0.5 718,865 + ABID97_RS03525 0.37 +0.1 718,865 + ABID97_RS03525 0.37 -1.0 718,865 + ABID97_RS03525 0.37 +1.0 718,865 + ABID97_RS03525 0.37 -0.1 718,866 - ABID97_RS03525 0.37 +0.1 718,866 - ABID97_RS03525 0.37 -0.8 718,941 - ABID97_RS03525 0.43 -0.1 718,941 - ABID97_RS03525 0.43 -0.6 718,941 - ABID97_RS03525 0.43 +0.7 718,941 - ABID97_RS03525 0.43 -0.8 718,947 - ABID97_RS03525 0.44 -0.6 719,204 + ABID97_RS03525 0.65 +1.6 719,265 - ABID97_RS03525 0.70 +0.1 719,306 + ABID97_RS03525 0.73 -0.6 719,319 - ABID97_RS03525 0.74 -0.8 719,319 - ABID97_RS03525 0.74 -0.2 719,354 + ABID97_RS03525 0.77 -0.4 719,555 + -0.4 719,555 + +0.3 719,561 + -0.9 719,561 + +1.5 719,562 - +0.6 719,797 + +0.7 719,801 + -2.7 719,924 + ABID97_RS03530 0.14 +0.2 719,924 + ABID97_RS03530 0.14 +0.4 719,925 - ABID97_RS03530 0.14 +0.2 719,996 + ABID97_RS03530 0.18 -0.6 720,083 + ABID97_RS03530 0.22 +0.9 720,084 - ABID97_RS03530 0.22 +0.3 720,614 + ABID97_RS03530 0.50 +0.5 720,615 - ABID97_RS03530 0.50 -1.6
Or see this region's nucleotide sequence